Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0020X.Seq
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   0.85 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   0.85 
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    24   1.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   3.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.9  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 208 VDSFWILYSERVRPSSSCSPAKI 140
           +DSF + Y +RVRP+    P ++
Sbjct: 16  LDSFSVSYDKRVRPNYGGPPVEV 38


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 208 VDSFWILYSERVRPSSSCSPAKI 140
           +DSF + Y +RVRP+    P ++
Sbjct: 16  LDSFSVSYDKRVRPNYGGPPVEV 38


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 216 GGGWIPSGYCTPRGYVHLPAAL 151
           GG   P GY   +G+VHL A L
Sbjct: 77  GGLEEPKGYTLFKGFVHLGAGL 98


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 466 RRQITKAPLACKKRCDCCVS 525
           R+ ITKAPL C   C  C S
Sbjct: 103 RKVITKAPLEC--MCRPCTS 120


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 354 WILPFSSTL*NLRTASLTCFF 292
           W+L  +S L  +   SL CFF
Sbjct: 546 WMLDLNSGLNKITRNSLDCFF 566


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 354 WILPFSSTL*NLRTASLTCFF 292
           W+L  +S L  +   SL CFF
Sbjct: 546 WMLDLNSGLNKITRNSLDCFF 566


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 165 LPAALQQRSTAVDWEGFPLCLEL*LSHSRWYLTARPQ 55
           +P+ALQ  ST++    F +  +  LS+   Y   +PQ
Sbjct: 404 IPSALQSYSTSMRDPAFYMLYQKILSYFLRYKKLQPQ 440


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 165 LPAALQQRSTAVDWEGFPLCLEL*LSHSRWYLTARPQ 55
           +P+ALQ  ST++    F +  +  LS+   Y   +PQ
Sbjct: 404 IPSALQSYSTSMRDPAFYMLYQNILSYFLRYKKLQPQ 440


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 335 DENGKIHRLXRDWTGEQ 385
           + +GK+HR  R  TGE+
Sbjct: 158 EHSGKLHRHMRIHTGER 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,460
Number of Sequences: 438
Number of extensions: 2863
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)