Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0014.Seq
         (636 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;...    42   0.009
UniRef50_Q4Q2J2 Cluster: Peroxisome biosynthesis protein-like pr...    34   3.3  
UniRef50_UPI0000EBCDB6 Cluster: PREDICTED: hypothetical protein;...    33   5.8  
UniRef50_Q5GU94 Cluster: Hemagglutinin; n=1; Xanthomonas oryzae ...    33   5.8  
UniRef50_Q00S17 Cluster: Chromosome 19 contig 1, DNA sequence; n...    33   5.8  
UniRef50_UPI0001554FA8 Cluster: PREDICTED: similar to transcript...    33   7.6  
UniRef50_UPI0000EBC77B Cluster: PREDICTED: hypothetical protein;...    33   7.6  
UniRef50_UPI0000F33985 Cluster: PAS domain-containing serine/thr...    33   7.6  
UniRef50_Q5N8F5 Cluster: Putative uncharacterized protein P0692C...    33   7.6  

>UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 133

 Score = 42.3 bits (95), Expect = 0.009
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
 Frame = +3

Query: 432 SAPAMRSLSYCRAPHSRVSLRAAPDS---PARVPGSPPGRSGEE----KFHSRLVEKLKR 590
           ++PA RS+       SR S RA+ +S   P++  GS P ++G      KFH+RLV+KLKR
Sbjct: 58  TSPAHRSVPLTSRHFSRTSSRASQNSLQSPSKSTGSSPPKTGSSNSLNKFHNRLVDKLKR 117

Query: 591 AL 596
           +L
Sbjct: 118 SL 119



 Score = 38.3 bits (85), Expect = 0.15
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 256 MMPVVKNDWDIYNSQXXXXXXXXXXKAGFNVGGRVRKISE-SRSEGPALSPRSAGS 420
           MMPV+KN+WDIY +                   R RK+SE S+SEGP+LS  S GS
Sbjct: 4   MMPVMKNEWDIYKTNRSRRSSECSNPQAC----RSRKVSECSKSEGPSLS-TSPGS 54


>UniRef50_Q4Q2J2 Cluster: Peroxisome biosynthesis protein-like
           protein; n=3; Leishmania|Rep: Peroxisome biosynthesis
           protein-like protein - Leishmania major
          Length = 954

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 417 LSPHR---SAPAMRSLSYCRAPHSRVSLRAAPDSPARVPGSPPGRSGEEKFHSRLVEKLK 587
           L+PH    SAP  R         S    R  P SPA +P SP       + H R+ E+L+
Sbjct: 308 LTPHGLDPSAPTARKAGDATRNDSAGVARPVPSSPALLPCSPVALDAVMQVHGRVAEELQ 367

Query: 588 RAL 596
           R L
Sbjct: 368 RHL 370


>UniRef50_UPI0000EBCDB6 Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 290

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 465 RAPHSRVSLRAAPDSPARVPGSPPGRS 545
           R PH+R +L AAP +P R PG+PP +S
Sbjct: 233 RPPHTRGALAAAP-TPPRGPGTPPAQS 258


>UniRef50_Q5GU94 Cluster: Hemagglutinin; n=1; Xanthomonas oryzae pv.
           oryzae|Rep: Hemagglutinin - Xanthomonas oryzae pv.
           oryzae
          Length = 998

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 326 RRRRGSTWEAGCGKYRSHGPKARRCH 403
           R R G    AG G+YR H P+ R CH
Sbjct: 750 RGRCGGCGTAGLGRYRHHHPRGRHCH 775


>UniRef50_Q00S17 Cluster: Chromosome 19 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 19 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 97

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -1

Query: 546 RFFPADYPEP-----LLGCLAPHAARLASEARDSTTTSAS 442
           R +P  +P+P     LL  + PH AR  + AR  TTT AS
Sbjct: 43  RVYPVSFPDPRCEVQLLEAILPHPARTRTAARPGTTTRAS 82


>UniRef50_UPI0001554FA8 Cluster: PREDICTED: similar to transcription
           termination factor, RNA polymerase II, partial; n=1;
           Ornithorhynchus anatinus|Rep: PREDICTED: similar to
           transcription termination factor, RNA polymerase II,
           partial - Ornithorhynchus anatinus
          Length = 770

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 192 GGNFSKNVPTKESPPPSPRWRHDAS--SEERLGHIQLSKVP 308
           GG  ++  PTK S PP  RWR D S  SEE  G   L K P
Sbjct: 379 GGPGAQGAPTK-SEPPGDRWREDKSSDSEEEEGVAFLCKKP 418


>UniRef50_UPI0000EBC77B Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 458

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 305 PVEPQNRRRRRGSTWEAGCGKYRSHGPKARRCHHDRQAQSSPQRSG 442
           P++P    R +GS W A      SH P A+R ++  +    P+  G
Sbjct: 241 PLQPARDLRDQGSPWRALASSSFSHSPPAKRINNHHRLSHDPRPQG 286


>UniRef50_UPI0000F33985 Cluster: PAS domain-containing
           serine/threonine-protein kinase (EC 2.7.11.1)
           (PAS-kinase) (PASKIN) (hPASK).; n=1; Bos taurus|Rep: PAS
           domain-containing serine/threonine-protein kinase (EC
           2.7.11.1) (PAS-kinase) (PASKIN) (hPASK). - Bos Taurus
          Length = 1340

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +3

Query: 426 HRSAPAMRSLSYCRAPHSRVSL----RAAPDSPARVP-GSPPGRSG 548
           HRS+P++ S S+C       S+    ++ P+ P  VP G PP RSG
Sbjct: 503 HRSSPSLLSCSWCVTTRRGDSIPEGSQSPPERPRDVPEGGPPARSG 548


>UniRef50_Q5N8F5 Cluster: Putative uncharacterized protein
           P0692C11.15; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0692C11.15 - Oryza sativa subsp. japonica (Rice)
          Length = 59

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 165 REHILFRLNGGNFSKNVPTKESPPPSPRWRH 257
           R H+L R NGG F    P +  PP   R +H
Sbjct: 13  RHHLLLRHNGGTFFMGAPRRRHPPHGARRQH 43


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,871,254
Number of Sequences: 1657284
Number of extensions: 10584993
Number of successful extensions: 41442
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41393
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)