Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0014.Seq
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.3  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   4.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.0  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   5.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.1  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   9.1  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 204 SKNVPTKESPPPSPRWRHDASSEERLGHI 290
           S N+PT+ SP  SP+  +  SS +R G++
Sbjct: 10  SSNIPTQPSPSASPK-SNKPSSAQRFGNL 37


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -3

Query: 202 KLPPLRRNKICSRKLTLRSIMILI---FFFTECLYFRKIS 92
           +L P  +N + +     +S+ +L+   F F  CL+FRK S
Sbjct: 104 RLRPFAKNGVTNGVKLAQSLFLLLPFNFIFFACLFFRKAS 143


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -2

Query: 410 DRGDNAGPSDRDSDIF------RTLPPTLNPAFSADSEARRDL*ELYMSQSFF 270
           D    A P  +DS +F       ++P  +NPA++   +    L E Y+S  FF
Sbjct: 115 DTYSTAIPFSKDSSVFDAVGQQSSVPIHINPAYTNSHQNSYSLNETYLSYDFF 167


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 30   TVILCLIQENSSLTYKFLQKPEIFLK 107
            ++I CL  EN  + Y  LQK E+F +
Sbjct: 1030 SIIKCLTNENEPVCYLGLQKLELFFQ 1055


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 171 HILFRLNG-GNFSKNVPTKESPPPSPRWRHDASSE-ERLGHIQLS 299
           H+L + N   N     PT+   PP+ + R  +SSE  R   IQLS
Sbjct: 474 HVLSKSNTVPNLVTGFPTRSDNPPNEKRRRTSSSENSRALDIQLS 518


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 417 LSPHRSAPAMRSLSYCRAPHSRVSLRAAPDSPARVPGSP 533
           L P   AP M +L+  + P     +   P  PA  PG P
Sbjct: 505 LPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYP 543


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = +2

Query: 329 RRRGSTWEAG--CGKYRS--HGPKARR-CHHDRQ 415
           +R GS   A   C +YRS  HGP+ RR   HD Q
Sbjct: 37  QRHGSRASADEFCEQYRSRSHGPQGRRSLEHDNQ 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,994
Number of Sequences: 5004
Number of extensions: 41523
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)