Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0014.Seq
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1448 + 33679110-33679140,33679858-33680057,33680163-336802... 30 1.8
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446... 30 1.8
04_04_0056 + 22406872-22407258,22408405-22409310 29 3.1
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 4.1
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 29 4.1
11_01_0385 + 2915532-2916482 23 5.0
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 28 5.4
02_05_1113 + 34207997-34208380 28 5.4
02_03_0160 - 15826050-15826462,15826870-15827140,15827242-15827253 28 5.4
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744... 28 7.1
10_07_0195 + 13972656-13972970,13973518-13973848,13975312-139754... 28 7.1
04_04_0899 - 29229812-29229929,29230009-29230179,29230262-292310... 28 7.1
12_02_0875 - 23920023-23920967,23921045-23921599,23921678-239220... 27 9.4
12_01_0442 + 3495333-3496484 27 9.4
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106... 27 9.4
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 27 9.4
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 27 9.4
>04_04_1448 +
33679110-33679140,33679858-33680057,33680163-33680272,
33680372-33680591,33680672-33680794,33680892-33680960,
33681915-33682157,33682235-33682297,33682414-33682477,
33682740-33682810
Length = 397
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 192 GGNFSKNVPTKESPPP 239
GG FS+N PTK+S PP
Sbjct: 295 GGRFSRNEPTKDSAPP 310
>02_04_0090 -
19643182-19643322,19644192-19644335,19644563-19644626,
19644710-19644796,19645371-19645513,19645706-19645771,
19645954-19646046,19646165-19646230,19646363-19646433,
19646882-19646982,19647217-19647317,19647421-19647528,
19647639-19648064
Length = 536
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 234 PPSPRWRHDASSEERLGHIQ 293
PPSPRWRHD + R G IQ
Sbjct: 58 PPSPRWRHDVRA--RAGTIQ 75
>04_04_0056 + 22406872-22407258,22408405-22409310
Length = 430
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 429 RSAPAMRSLSYCRAPHSRVSLRAAPDSPARVPGSPP 536
RS+ +R++ R+P S S A+P + A VPG+ P
Sbjct: 14 RSSALVRAILASRSPLSSSSCAASPTTAAPVPGTAP 49
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 465 RAPHSRVSLRAAPDSPARVPGSPPGR 542
R HSR S R+ SPAR GSPP R
Sbjct: 214 RREHSRRSGRSRSRSPARDRGSPPRR 239
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 465 RAPHSRVSLRAAPDSPARVPGSPPGR 542
R HSR S R+ SPAR GSPP R
Sbjct: 7 RREHSRRSGRSRSRSPARDRGSPPRR 32
>11_01_0385 + 2915532-2916482
Length = 316
Score = 23.4 bits (48), Expect(2) = 5.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +3
Query: 216 PTKESPPPSPRWRH 257
P PPP+P W H
Sbjct: 250 PFPSHPPPTPAWPH 263
Score = 23.4 bits (48), Expect(2) = 5.0
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +3
Query: 231 PPPSPRWRHDASSEERLGHIQLSKVPSSLR 320
PPP P W H + L S VP + +
Sbjct: 278 PPPMPAWPHPGNQWPPLPPFHGSDVPPATK 307
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 226 SFVGTFLEKLPPLRRNKICSRKLTLRSIMILIFFFTECLY-FRKIS 92
S GTF P + +K C+RK+ + S ++++ T CL F+ +S
Sbjct: 204 SKAGTFRWMAPEMIHDKRCNRKVDVYSFGLVLWELTTCLVPFQNLS 249
>02_05_1113 + 34207997-34208380
Length = 127
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 350 EAGCGKYRSHGPKARRCHHDRQAQSSPQRSG 442
E GCG+ R GP++R R+A + SG
Sbjct: 64 EGGCGRGRRRGPRSRPARTARRAACAEDGSG 94
>02_03_0160 - 15826050-15826462,15826870-15827140,15827242-15827253
Length = 231
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -2
Query: 422 TEPADRGDNAGPSD--RDSDIFRTLPPTLNP 336
++PAD D++ P+D DSD+ T PPT P
Sbjct: 195 SDPADDADDSDPADCAADSDVAST-PPTARP 224
>12_02_0096 -
13573612-13573632,13573846-13573884,13574160-13574493,
13574660-13574830,13574913-13575730,13575812-13576114,
13576352-13577085,13577174-13577303
Length = 849
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 183 RLNGGNFSKNVPTKESPP--PSPRWRHDASSEERLGHIQLSKVPS 311
R+N N+P +P P+PR +HDAS + +KVP+
Sbjct: 330 RVNKVLADMNIPRVTTPAVHPTPRAQHDASPSQHRSSCASTKVPA 374
>10_07_0195 +
13972656-13972970,13973518-13973848,13975312-13975463,
13975573-13976280,13976424-13976615,13977264-13977425
Length = 619
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 423 PHRSAPAMRSLSYCRAPHSRVSLRAAPDSPARVPGSP 533
PH +S + PHS +SL D P RV SP
Sbjct: 403 PHPLRQTYQSTKMEKHPHSGISLYRRDDHPTRVSPSP 439
>04_04_0899 -
29229812-29229929,29230009-29230179,29230262-29231094,
29231176-29231637,29231716-29232186
Length = 684
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 183 RLNGGNFSKNVPTKESPP--PSPRWRHDASSEERLGHIQLSKVPS 311
R+N N+P +P P+PR +HDAS + +KVP+
Sbjct: 252 RVNKVLADMNIPRVTTPAVQPTPRVQHDASPSQHRSSCASTKVPA 296
>12_02_0875 -
23920023-23920967,23921045-23921599,23921678-23922083,
23922175-23922452
Length = 727
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 513 LGCLAPHAARLASEARDSTTTSAS 442
+GC A A +AS A ++TTTS+S
Sbjct: 1 MGCAASKGAAVASPAYEATTTSSS 24
>12_01_0442 + 3495333-3496484
Length = 383
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +3
Query: 441 AMRSLSYCRAPHSRVSLRAA---PDSPARVPGSPPGRSGEEKFHSRLVEKL 584
A+ SL RAP +R + A PDSP PG P S + + R KL
Sbjct: 151 AVGSLPEHRAPAARTTTAAPASPPDSPIWTPGHKPPSSSPDIYLVRRTPKL 201
>08_01_0133 +
1062365-1063057,1063210-1063318,1063914-1064005,
1064399-1064560,1064718-1064834,1065029-1065127
Length = 423
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 552 PRRFFPADYPEPLLGCLAPHAARLASEARDSTTTSASPERCGE 424
PR P D+P PLL A AA +AS + S C +
Sbjct: 74 PRNRNPPDHPAPLLAAAAAAAAAVASPHAALALSGGSMGGCSD 116
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 326 RRRRGSTWEAGCGKYRSHGPKARRCHHDRQAQSSPQRSG 442
R+R G+ W +G + RS G + R Q +S RSG
Sbjct: 402 RKRSGAQWRSGSARRRSGGGGSVRKRSCAQWRSGSARSG 440
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3
Query: 192 GGNFSKNVPTKESPPPSPRWRHDASS 269
GG+FS P PPP PR R D SS
Sbjct: 628 GGHFSGTSPNHPLPPP-PRHRSDDSS 652
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,728,157
Number of Sequences: 37544
Number of extensions: 316964
Number of successful extensions: 1575
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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