Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0014.Seq
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21310-2|AAA62521.1|  322|Caenorhabditis elegans T box family pr...    29   2.1  
Z73425-5|CAA97787.1|  427|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>U21310-2|AAA62521.1|  322|Caenorhabditis elegans T box family
           protein 11 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 183 RLNGGNFSKNVPTKESPPPSPRWRHDAS 266
           R  GG ++++V T++  PP   W H+ S
Sbjct: 68  RFTGGQWAESVSTEKKDPPRKVWHHNGS 95


>Z73425-5|CAA97787.1|  427|Caenorhabditis elegans Hypothetical
           protein F12F6.9 protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 302 GPVEPQNRRRRRGSTWEAGCGKYRSHGPK 388
           GP  P  RR R+G+  ++  G + S GPK
Sbjct: 165 GPSGPPGRRGRKGADGKSAMGGFGSPGPK 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,698,230
Number of Sequences: 27780
Number of extensions: 243325
Number of successful extensions: 961
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)