Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0014.Seq
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.3  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   5.7  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   5.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 187 STEAISLKTFQQKSHR 234
           S E ISL T QQK H+
Sbjct: 224 SDEDISLTTHQQKRHK 239


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 326 RRRRGSTWEAGCGKYRSHGPKARRCHHDRQ 415
           + +R   WE    KY S G   +R  H  Q
Sbjct: 91  KTKRPKDWERLSAKYDSTGEYKKRYEHGLQ 120


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 326 RRRRGSTWEAGCGKYRSHGPKARRCHHDRQ 415
           + +R   WE    KY S G   +R  H  Q
Sbjct: 91  KTKRPKDWERLSAKYDSTGEYKKRYEHGLQ 120


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 171 HILFRLNGGNFSKNVPTKESPPPSPRWRHDASSEERLGHIQL 296
           HI  R+ G N         +PPP   WR + +  E L   ++
Sbjct: 319 HISARV-GDNVEIKCDVTGTPPPPLVWRRNGADLETLNEPEI 359


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 35  YCVSCGFH 12
           YCV+CG H
Sbjct: 542 YCVACGLH 549


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 483 VSLRAAPDSPARVPGSPPGRSGEEKF 560
           V   AAP+ PA       G +GEE F
Sbjct: 45  VGTPAAPNMPAEEGEGMAGVTGEEPF 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,707
Number of Sequences: 438
Number of extensions: 3068
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)