Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0007.Seq
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.72 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    27   2.2  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   3.8  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    27   3.8  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   5.0  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   6.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.8  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   8.8  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   8.8  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = -1

Query: 196 YFVGFQN-SEVMINRDNWGHSYGDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 44
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +2

Query: 119 TSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKL 289
           T    +++   +P   + G+      +P    I  C KY S+ +S   HS L  ++L
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 734 LPWLSRVTGNQGSIPEREPEKRLPHPRKPAGAQITHSRHGEVVTKN 597
           +P +S V  +   IPER+  + L  P       + H    EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 221 PCTKYSSSIFSRFEHSNLFKVKLSAHLDTHRSSPR*VFDIEPAFFRTPAHRR 376
           P   Y +S++ R  +  L    L   L +  ++PR    +EP +    AHRR
Sbjct: 343 PLPSYQNSMYDRL-YDGLSYSNLDTPLPSGATTPRRRDSMEPTYASNEAHRR 393


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 604 VTTSPCREWVICAPAGFLGCGSRFSGSLSGIEP*FPVTRDNHGSRRTTIE 753
           +TT   ++ +    AG L  G+RF G+L G    F    D   S R  ++
Sbjct: 432 ITTRAGKDLISSLVAGLLTIGTRFGGALDGAAQEFSKAYDAGLSPRAFVD 481


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 151 NWGHSYGDVRGEILGSSQDEHQRKHLPKVFSSIKNE 44
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 538 LKYLKCTHSDYEARKSPESLFFVTTS 615
           L + K T+  Y A K PE L + TTS
Sbjct: 898 LVHEKFTNHQYSALKDPEKLVYETTS 923


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 740 LRLPWLSRVTGNQGSIPEREPEKRLP 663
           LRL +L +   NQ S  E++ EKR+P
Sbjct: 283 LRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +2

Query: 650 ASLDVVAVSQAPSPESNPDSPLPVTT 727
           A++ V++V+ +P+P +  + P PV+T
Sbjct: 173 ANVHVLSVAASPNPSTPSNGPAPVST 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,849
Number of Sequences: 5004
Number of extensions: 59474
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)