Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0007.Seq
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0861 + 8153108-8153266,8154633-8155136 36 0.035
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 30 2.3
09_01_0019 + 403078-404211 30 2.3
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200... 29 4.0
10_08_1037 - 22477358-22478752 29 5.3
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700... 29 5.3
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121... 29 5.3
10_08_0203 + 15776521-15776656,15776662-15776819 28 9.2
04_04_1225 - 31865556-31865590,31865687-31865734,31866179-318662... 28 9.2
01_05_0005 - 16886553-16886946,16887079-16887404 28 9.2
01_01_0803 + 6252721-6252736,6252807-6253252,6253372-6253613,625... 28 9.2
>12_01_0861 + 8153108-8153266,8154633-8155136
Length = 220
Score = 35.9 bits (79), Expect = 0.035
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 563 PITRLVRVPNRYFSSLPPRAGSG*FARLLASLDVVAVSQAPSPESNP--DSPLPVTTMVV 736
P ++L P SS P G RL S +VA+ + P P S+P D P TT+ +
Sbjct: 86 PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145
Query: 737 AELPSK 754
EL +
Sbjct: 146 IELDDR 151
>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 288 CRPTSTLTAAHRDRXLILNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNYELFNRNN 467
C + + D+ L+L R+ + MLR +TA+A +++ K E ++NN
Sbjct: 1045 CAAAKSAAQSEHDKNLLLQRQLDDSLREITMLRSSKIMTAEAERENSNLKNLVESLSKNN 1104
Query: 468 FSIRY 482
S+ Y
Sbjct: 1105 SSLEY 1109
>09_01_0019 + 403078-404211
Length = 377
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 711 GESGFDSGEGA*ETATTSKEASRRANYPLPARGGSDEK*RFG 586
G S DSG GA ++A K +SRR + GSD R G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362
>04_01_0178 +
2006369-2006494,2006582-2006664,2007693-2007819,
2008579-2008638,2009606-2009735,2009821-2010047,
2010226-2010318,2010395-2010466,2011392-2011532,
2012045-2012047,2012387-2012443,2012909-2012995,
2013081-2013116
Length = 413
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +2
Query: 134 IRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTHR 313
I+M P P H+L N + P YSS+I F H+N F + L TH
Sbjct: 53 IKMVPPGP--HFLYYCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTHP 110
Query: 314 S 316
S
Sbjct: 111 S 111
>10_08_1037 - 22477358-22478752
Length = 464
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 563 PITRLVRV-PNRYFSSLPPRAGSG*FARLLASLDVVAVSQAPSPESNPDSPLPVTTMVVA 739
P+T +R+ N FS+ PP A A A+ QAP +P P PV + +
Sbjct: 324 PVTAYMRILENSLFSATPPGAA----AAAAAAAAAATGQQAPPHHPHPPPPPPVPSPGIL 379
Query: 740 ELPS 751
PS
Sbjct: 380 PSPS 383
>03_03_0090 +
14367033-14367279,14367402-14368205,14368314-14370039,
14370135-14370219,14370398-14370457,14370744-14370836
Length = 1004
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 158 INHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFE 262
I H L +LK KI P +I C +YS S F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853
>03_03_0053 +
14109636-14109948,14110075-14110302,14112030-14112181,
14112305-14112578,14112687-14112739
Length = 339
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 146 PVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFK 280
P+ + YLG+ NK+ P+ Y + C K+ + FS++ H++ K
Sbjct: 248 PIGCVPGYLGIFP-NKLSPKDYDVFGCIKWLND-FSKY-HNHALK 289
>10_08_0203 + 15776521-15776656,15776662-15776819
Length = 97
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 756 NFDGSSATTMVVTGNGESGFDSGEGA*ETATTSKEASRRANYPLPA 619
N D A TM + G+G SG G G +AT + S AN + A
Sbjct: 40 NDDDDGAATMELEGSGSSGTTIGRGG--SATPGPQPSLTANVVMTA 83
>04_04_1225 -
31865556-31865590,31865687-31865734,31866179-31866262,
31866336-31866395,31866589-31866642,31866747-31867710
Length = 414
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 383 EHIVGEPAF*KTPVQYQXPIAVSCGECRGGPTI 285
EH+ +P P++ P+ SC E GG T+
Sbjct: 272 EHVNPQPLSAVVPIKSGQPVLASCKEVAGGKTV 304
>01_05_0005 - 16886553-16886946,16887079-16887404
Length = 239
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 459 RNNFSIRYWSWNYRGC 506
R+N S RYW W GC
Sbjct: 90 RSNSSFRYWRWQPHGC 105
>01_01_0803 +
6252721-6252736,6252807-6253252,6253372-6253613,
6253753-6253849,6253984-6254167,6254241-6254322,
6254602-6254647,6255473-6255490
Length = 376
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 635 FARLLASLDVVAVSQAPSPESNPDSPLPVT 724
F+RL+A L V +++AP + PD P+ VT
Sbjct: 128 FSRLVAGLPV-GMAEAPDHPARPDKPIVVT 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,943,161
Number of Sequences: 37544
Number of extensions: 423349
Number of successful extensions: 1226
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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