Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0007.Seq
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 116 FTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPC-TKYSSSIFSRFEHSNLFKVKLS 292
           F  N A     +  + HYLGV + + +E    +++    KY   + +RF+ S   K+ ++
Sbjct: 223 FLLNTATLTSSLKSLTHYLGVHRISSVERVLENMLHLFPKYDPDLDNRFDFSECVKIIIN 282

Query: 293 AHLDTHRS 316
           + L    S
Sbjct: 283 SALKIESS 290


>AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical
           protein 4R79.1a protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 193 FVGFQNSEVMINRDNWGHSYGDVRGEILGSSQDEHQRKHLPKVFSSIKNES*RFEGD*IP 14
           F G+   +  +    W +S G  +G+I G   +  +    P +F+++KN+   +EG  IP
Sbjct: 29  FAGYIPEDHRVTHHEWQNS-GKFQGDIDGVDPNLLKLPEGPVLFNALKNKQLTWEGGVIP 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,108
Number of Sequences: 27780
Number of extensions: 351732
Number of successful extensions: 956
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)