Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0006.Seq
         (765 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3ERZ4 Cluster: Putative uncharacterized protein; n=1; ...    34   4.4  
UniRef50_UPI0000499B66 Cluster: hypothetical protein 25.t00011; ...    33   5.9  

>UniRef50_A3ERZ4 Cluster: Putative uncharacterized protein; n=1;
           Leptospirillum sp. Group II UBA|Rep: Putative
           uncharacterized protein - Leptospirillum sp. Group II
           UBA
          Length = 499

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 277 PVTFFFPDLFLPGVRNTVSKPEPLASLIMHLTVHTDVFVASEVCFNFSISFF-PCFIMKQ 453
           P T+ F  +F PG R T S    +A     L   +    +  VC    +S   PC + K 
Sbjct: 203 PCTYPFRVVFAPGARGTSSDVVYVACTSPELLGSSPPAASIFVCSIEELSSTTPCSVYKS 262

Query: 454 YTSYTNFLP 480
           YTSY + LP
Sbjct: 263 YTSYNSSLP 271


>UniRef50_UPI0000499B66 Cluster: hypothetical protein 25.t00011;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 25.t00011 - Entamoeba histolytica HM-1:IMSS
          Length = 207

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 358 IMHLTVHTDVFVASEVCFNFSISFFPCFIMKQYTSYTNFL 477
           I+H  +  D+F  S  C  F +   P FI+  Y+SY   +
Sbjct: 96  ILHSVIINDIFALSMCCIGFGVYVAPLFIIGIYSSYNEMI 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,642,123
Number of Sequences: 1657284
Number of extensions: 13666005
Number of successful extensions: 35464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35452
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)