Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0006.Seq
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 31 0.24
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.7
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 28 1.7
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 2.2
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 27 2.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 5.1
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.1
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 26 5.1
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 26 6.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.0
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 30.7 bits (66), Expect = 0.24
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2
Query: 146 KLTTNYERARLQMEKKNRK*SEAGK*KK*HSITTNRISSKNNL 18
K+T ++ RL E+ +R SEA K K T+RI +KN+L
Sbjct: 498 KITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHL 540
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +3
Query: 180 NFSKPFSGTE---FRCLLCSYYDYIFLL 254
NF PF+G+E FRCLL ++ +F L
Sbjct: 100 NFLHPFTGSELSLFRCLLLFFFFLLFFL 127
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 490 LKERVENLYTTYIASL*NRGRMI*KN*NRLRKQQ--KHQCV 374
L++ VEN +T Y ASL ++ +MI ++ K + KHQ +
Sbjct: 106 LQDDVENAFTRYAASLKDKKKMIVSGIEKVHKDKLSKHQAL 146
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 146 KLTTNYERARLQMEKKNRK*SEAGK*KK*HSITTNRISSKNNL 18
K+T ++ RL E+ +R +EA K K + RI +KN+L
Sbjct: 498 KITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHL 540
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 27.5 bits (58), Expect = 2.2
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +1
Query: 301 LFLPGVRNTVSKPEPLASLIMHLTVHTDVFVASEVCFNFSISFFPCFIMKQYTSYTNFLP 480
+++ G TVS PE + L H + ++ N S F F +Q S +
Sbjct: 157 IYVGGFHLTVS-PESMLCLAQHANENNKPYI-----MNLSAPFLSQFFKEQMDSVIPYCD 210
Query: 481 FLLSTTPVCPA*CMFYK-KSTNTQQIAMATKSTSNYNKQ 594
+++ + + KST+ Q+IA+A S NK+
Sbjct: 211 YVIGNEAEILSYGENHGIKSTDVQEIALALSSVEKVNKK 249
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 428 NDIEKLKQTSEATKTSVCTVRCIINEAKGS 339
+ ++ +++T E ++CT CI+ +A GS
Sbjct: 1287 HSVKDIEETIELVHPNICTDGCILFQASGS 1316
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 192 PFSGTEFRCLLC 227
PFSGT+ RCL+C
Sbjct: 517 PFSGTDERCLVC 528
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -1
Query: 708 ERVIGRSVEPCARTAPSFRLLPKVRLRTVE-SLPLLTVKL 592
E++I S++ PSF+ L ++++RT++ +L +T K+
Sbjct: 169 EKIIHHSLKGDIEYLPSFKFLLEIKVRTIDYALLFITYKI 208
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 364 HLTVHTDVFVASEVCFNFSI 423
HLT H DV +A+++ +F +
Sbjct: 381 HLTTHADVLMATQILVDFGV 400
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 532 KSTNTQQIAMATKSTSNYNKQLN 600
+STNT Q+ M +++ +N Q+N
Sbjct: 249 QSTNTSQLPMPSRNVNNLGSQVN 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,122
Number of Sequences: 5004
Number of extensions: 62614
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -