Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0006.Seq
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70...    28   7.1  
02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435...    28   9.4  

>01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-700469,
            700547-701373,701487-701559,701993-702078,702153-702227,
            702308-702548,702905-703239,703328-703414,703497-703640,
            703714-704670
          Length = 1167

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -1

Query: 186  KNLKKI*ILMARNEAYDEL*KS*ASD-GKKEQKIIGSW*MKKVTFD 52
            KN+K+I IL   N   DE+ K+ A D GKK  K++G    K V+FD
Sbjct: 1047 KNMKQIGILC--NNGGDEI-KNFALDLGKKLNKVLGDCNYKTVSFD 1089


>02_05_0681 +
           30842038-30842301,30843067-30843300,30843409-30843578,
           30844130-30844474,30844475-30844661,30844747-30844798,
           30844843-30845108,30845302-30845400,30845577-30846292,
           30846616-30847098,30847288-30847546
          Length = 1024

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 168 ISSLNFSKPFSGTEFRCLLC---SYYDYIFLLRLNETIHSGN 284
           +S+L+F  PF   E RC L    S++ ++    L    +SGN
Sbjct: 294 VSTLDFGDPFRAHEMRCRLVASFSWHKFVGCFLLGSCTNSGN 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,489,325
Number of Sequences: 37544
Number of extensions: 336433
Number of successful extensions: 740
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)