Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0006.Seq
         (765 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069785-1|AAL39930.1|  528|Drosophila melanogaster SD02553p pro...    31   1.3  
AE014297-2312|AAF55389.1|  979|Drosophila melanogaster CG5148-PA...    31   1.3  
AY052098-1|AAK93522.1|  465|Drosophila melanogaster SD04658p pro...    29   7.0  

>AY069785-1|AAL39930.1|  528|Drosophila melanogaster SD02553p
           protein.
          Length = 528

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 572 PQAIITNNLTVNNGRLSTVRKRTFGSKRNEGAVRAQGSTDLPITRSIR 715
           P++IITNN  +      T+ ++   +K  + +VR  G+T  P T  ++
Sbjct: 181 PKSIITNNEILEKNSTETLSEKQVAAKAKKQSVRKTGATGKPSTSRLK 228


>AE014297-2312|AAF55389.1|  979|Drosophila melanogaster CG5148-PA
           protein.
          Length = 979

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 572 PQAIITNNLTVNNGRLSTVRKRTFGSKRNEGAVRAQGSTDLPITRSIR 715
           P++IITNN  +      T+ ++   +K  + +VR  G+T  P T  ++
Sbjct: 632 PKSIITNNEILEKNSTETLSEKQVAAKAKKQSVRKTGATGKPSTSRLK 679


>AY052098-1|AAK93522.1|  465|Drosophila melanogaster SD04658p
           protein.
          Length = 465

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 268 LSIPVTFFFPDLFLPGVRNTVSKPEPLASLIMHLTVHTDVFVASEV-CFNFSISFFPCFI 444
           +S+ V  FF DL    +    ++   L+ L+         F+   V CF +S  F P F+
Sbjct: 21  VSLLVIHFFSDLLRASLGGYYNQDVTLSQLVESQNSDYAWFLKLLVNCFGYSCVFVPGFL 80

Query: 445 MKQYTSYTNFL 477
           + +Y    N+L
Sbjct: 81  IYKYVGRINYL 91


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,325,146
Number of Sequences: 53049
Number of extensions: 605299
Number of successful extensions: 1632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)