Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0006.Seq
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78198-9|CAE17828.1|  164|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AC025715-2|AAK68447.2|  439|Caenorhabditis elegans Hypothetical ...    28   6.3  

>Z78198-9|CAE17828.1|  164|Caenorhabditis elegans Hypothetical
           protein F55C5.10 protein.
          Length = 164

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 187 EKFKEDINFNGSE*SLRRIMKELGFRWKKRTENNRKLVNEKSNIRLLRIEYLQK 26
           +K +E+        +LRR  + LGF+       N+KL +EK  +++ R E+ +K
Sbjct: 74  KKIEEEKEIRKERRTLRRQNRFLGFQNDLLVHQNQKLASEKHELKVERQEFAEK 127


>AC025715-2|AAK68447.2|  439|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.6 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 145 SLRRIMKELG-FRWKKRTENNRKL 77
           +LR   KE+G FRWKK TEN  K+
Sbjct: 416 TLRNSHKEVGVFRWKKLTENLGKI 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,198,902
Number of Sequences: 27780
Number of extensions: 340500
Number of successful extensions: 872
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)