Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0006.Seq
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.1  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   5.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   5.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.5  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 334 CSPCFGLRVRKDQGRRKLP 278
           C  CF  R   D   RKLP
Sbjct: 375 CRKCFKSRTNLDPSNRKLP 393


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 249 KRCNHNNYITSSETPYRRKASKNLKKI 169
           K  N+NNY  +    Y    + N KK+
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 249 KRCNHNNYITSSETPYRRKASKNLKKI 169
           K  N+NNY  +    Y    + N KK+
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +3

Query: 150 SEPLKFISSLNFSKPFSGTEFRCLLCSYY-------DYIFLLRLNETIHSGNF 287
           S+  K ISSL+ +  ++   ++ L C+ Y       +YI  + +   I+ GNF
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNF 128


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +3

Query: 150 SEPLKFISSLNFSKPFSGTEFRCLLCSYY-------DYIFLLRLNETIHSGNF 287
           S+  K ISSL+ +  ++   ++ L C+ Y       +YI  + +   I+ GNF
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNF 128


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +3

Query: 150 SEPLKFISSLNFSKPFSGTEFRCLLCSYY-------DYIFLLRLNETIHSGNF 287
           S+  K ISSL+ +  ++   ++ L C+ Y       +YI  + +   I+ GNF
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYIEQIPIPVPIYCGNF 128


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 520 MFYKKSTNTQQIAMATKSTSNY 585
           + Y  +    ++ +ATK+T NY
Sbjct: 112 VLYNNADGNFEVTLATKATLNY 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,110
Number of Sequences: 438
Number of extensions: 4710
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)