Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0003X.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.45 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   5.6  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   7.3  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.3  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 290 FWGRSAVKH*IGTLKGDPDL 349
           +WGR+  +H +G L+G P+L
Sbjct: 227 YWGRAIARHFVGQLRGGPNL 246


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 251 PDRRFYAL*RWSPRSVIVDSCSK 183
           PD +F+ +  W P  + + SC K
Sbjct: 220 PDAKFFGIFDWDPHGLCIYSCFK 242


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 194 SPLLQNEDSNVKGRKTVYQGVAH 262
           SP+LQ  D  + G +TVY G  H
Sbjct: 309 SPVLQKPDLIMTGNRTVYIGNIH 331


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 227 KGRKTVYQGVAHYVNHHPNQVFWGRSAVKH*IGTLKGDPDL 349
           KGR T+ +G +  V+H  N+    R  +KH    L GDPD+
Sbjct: 94  KGRITI-KGSSSSVSHTINEEE-RREFIKHINSVLAGDPDV 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,139
Number of Sequences: 5004
Number of extensions: 41552
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)