Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0003X.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z46267-2|CAC42301.1|  600|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF228712-1|AAF34798.1|   91|Caenorhabditis elegans molybdenum co...    27   8.9  

>Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical
           protein ZC455.1 protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +2

Query: 203 LQNEDSNVKG------RKTVYQGVAHYVNHHPNQVFWGRSAVK 313
           L N  S+++G      R+TV  G+    NH PN ++  RS  K
Sbjct: 188 LDNRHSSIRGYNNRSCRRTVLSGLDRNANHSPNGIYVRRSRSK 230


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 453 TTTPAALNAAVKGASGCTFGEMCAEPL 533
           TT P A  +   G++ CT  ++CA PL
Sbjct: 279 TTKPPAAPSTACGSATCTSTQVCASPL 305


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 453 TTTPAALNAAVKGASGCTFGEMCAEPL 533
           TT P A  +   G++ CT  ++CA PL
Sbjct: 279 TTKPPAAPSTACGSATCTSTQVCASPL 305


>Z46267-2|CAC42301.1|  600|Caenorhabditis elegans Hypothetical
           protein F49E2.1b protein.
          Length = 600

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 157 RDRVECCSSLEQESTITERGLQRQRA*NRLSGRGPLREPS 276
           RDR+ C  S EQ S + ++ +  ++A + +   G   EP+
Sbjct: 343 RDRIRCGDSDEQLSEVIQKAVNNKKARHAVFRNGRSEEPA 382


>AF228712-1|AAF34798.1|   91|Caenorhabditis elegans molybdenum
           cofactor synthesis-step1 protein MOCS1A-B protein.
          Length = 91

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 157 RDRVECCSSLEQESTITERGLQRQRA*NRLSGRGPLREPS 276
           RDR+ C  S EQ S + ++ +  ++A + +   G   EP+
Sbjct: 21  RDRIRCGDSDEQLSEVIQKAVNNKKARHAVFRNGRSEEPA 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,353,199
Number of Sequences: 27780
Number of extensions: 244385
Number of successful extensions: 450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)