Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0003X.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    32   0.29 
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    27   8.3  
At1g73290.1 68414.m08481 serine carboxypeptidase S10 family prot...    27   8.3  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +1

Query: 154 DRDRVECCSSLEQESTITERGLQRQRA*NRLSGRGPLREPSP*SSFLGSKCRKALNRNPK 333
           D+D  E CS+ E ES + E  L +++A N++ GR  L  P          C++ + +  +
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGRDLLVTP----------CKRDIYKGKQ 482

Query: 334 -GRPRFRA*RGKPANVARKEGQKATGAGAKALASVAVT 444
            G  RF++ R    N   +    A G G K L  +  T
Sbjct: 483 GGNKRFKS-RTVSLNEKPEINNAANGVGDKDLGHIVKT 519


>At5g24280.1 68418.m02856 expressed protein ; expression supported
           by MPSS
          Length = 1634

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 203 IVDSCSKLEQHSTLSRSILVIYKGFC 126
           I+D  SKLE  S+LS  I +I  G C
Sbjct: 691 IIDGISKLEVQSSLSLPITIIDSGKC 716


>At1g73290.1 68414.m08481 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P07519) [Hordeum vulgare]; glucose acyltransferase
           GB:AAD01263 [Solanum berthaultii]; contains Pfam
           profile: PF00450 Serine carboxypeptidase;
          Length = 438

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 201 SGLLFQTGTTLNPISVYSCDL*GILPISAYWLK 103
           SGLLF+ G     + VY+  L  ++P +  W K
Sbjct: 91  SGLLFENGPLAMKLDVYNGTLPSLVPTTYSWTK 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,695,361
Number of Sequences: 28952
Number of extensions: 227818
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)