Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335H12f
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0386 + 3003053-3003173,3003351-3003666,3003847-3004159           28   4.2  
03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676           27   9.7  

>03_01_0386 + 3003053-3003173,3003351-3003666,3003847-3004159
          Length = 249

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 149 IYDDHYAKNNFVYKLKLTNNAGSSDTCYL 63
           +YD  Y  NN      L NN  S   CYL
Sbjct: 49  LYDQGYGINNAALSTPLFNNGASCGQCYL 77


>03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676
          Length = 240

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 149 IYDDHYAKNNFVYKLKLTNNAGSSDTCYL 63
           +YD  Y  NN      L N+  S   CYL
Sbjct: 49  LYDQRYGINNAALSTPLFNDGASCGQCYL 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,929,274
Number of Sequences: 37544
Number of extensions: 59781
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)