Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335H08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1671 - 39018929-39019027,39019310-39019439,39019529-390196... 33 0.18
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408... 30 0.98
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 30 1.3
02_02_0360 + 9400082-9400524,9406729-9406936 29 2.3
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 29 3.0
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 29 3.0
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 29 3.0
09_04_0381 + 17128437-17128655,17129250-17129331,17129409-171295... 28 4.0
06_01_0720 + 5248714-5248967,5250600-5251086 27 6.9
02_01_0035 - 220036-221419,222050-222801 27 6.9
12_02_0890 + 24040981-24041125,24041264-24041317,24042675-240428... 27 9.1
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595 27 9.1
>01_06_1671 -
39018929-39019027,39019310-39019439,39019529-39019637,
39020183-39020216,39020376-39021151,39021328-39021464,
39021732-39021876,39021958-39022341,39022435-39023210,
39023609-39023658,39024213-39024262,39024361-39024455,
39024539-39024797,39024943-39024982
Length = 1027
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 85 EVNDGVAVEKHVEKHNT--EGDNDSGVDESTQGNDLNGSPSSPNK 213
E +DG+ ++ H T E D++ DES +G ++ PSS NK
Sbjct: 161 EADDGIIIQGRSAVHPTDMEVDDNQNKDESAEGYNMEDGPSSHNK 205
>07_01_0549 +
4082672-4082731,4083424-4083489,4083628-4083674,
4083757-4083802,4083905-4083985,4084105-4084147,
4084258-4084307,4084392-4084473,4084538-4084587,
4084687-4084760,4084870-4084921,4085034-4085459,
4085816-4086403
Length = 554
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 267 EPFSIIEQECNSQNSRNSYPDRKEKSTDE*SSSWECTVAKFKSREI*DRI 416
+PF ++E + S +RN +PD + S + ++W+ +K S ++ DRI
Sbjct: 228 QPF-VLELQLKSSPARNLFPDTNKASCSDDENNWKAKYSKSHSFKV-DRI 275
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 124 KHNTEGDNDSGVDESTQGNDLNGSPSSPNKKIVNKTPTKE 243
KH E +N++G++ S G +N S ++ V PTKE
Sbjct: 312 KHVEESENNAGLNLSLFGKHINESENNAPNVAVRSEPTKE 351
>02_02_0360 + 9400082-9400524,9406729-9406936
Length = 216
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 121 EKHNTEGDNDSGVDESTQGNDLNGSPSSPNKKIVNKTPTKE 243
EK + E D+D+G DE ND S +++ N T+E
Sbjct: 151 EKESEEDDDDNGDDEEEVSNDDTTEEVSDEEEVSNDDTTEE 191
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 367 GNAPSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFG 486
GN PSP+ + ++K + N Y G G + L G
Sbjct: 756 GNTPSPSTQCYENKFATSTNGNYSIGNGDTLSSSNSLHAG 795
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 118 VEKHNTEGDNDSGVDESTQGN-DLNGSPSSPNKKIVNKTP 234
VEKH T +DSG ES+ N + +G+ +P ++ + TP
Sbjct: 13 VEKHETAARSDSGTSESSVLNGEASGAAIAPAEEGSSSTP 52
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 76 KMAEVNDGVAVEKHVEKHNTEGDNDSGVDESTQGNDLNGSPSSPNKKIVNKT 231
K E N G V+K ++H+T+ D+DS E + D S ++ K+ V +
Sbjct: 544 KEKEENSGKNVDKR-KRHDTDSDSDSHARERKRHLDARASLAAQKKRSVTSS 594
>09_04_0381 +
17128437-17128655,17129250-17129331,17129409-17129564,
17129646-17130431,17130743-17131094,17131467-17131548,
17131756-17131833,17132041-17132055
Length = 589
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 297 NSQNSRNSYPDRKEKSTDE*SSSWECTVAKFKSR 398
+S+NS N D K+K+ + SSSWE T AK S+
Sbjct: 500 SSKNSTNVI-DVKKKTVESKSSSWELTEAKSISK 532
>06_01_0720 + 5248714-5248967,5250600-5251086
Length = 246
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 310 PEIPTPTEKKKVPMNKVQVGNAPSPNLKAVKSKIGSLDNATYKP 441
PE+P+P ++K + + V + S L V S N+T P
Sbjct: 114 PEVPSPKKRKGLLPSSVDKNKSQSKELSPVDDATSSPTNSTSSP 157
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.5 bits (58), Expect = 6.9
Identities = 29/123 (23%), Positives = 37/123 (30%), Gaps = 2/123 (1%)
Frame = +1
Query: 88 VNDGVAVEKHVEKHNTEGDNDSGVDESTQGNDLNGSPSSPNKKIVNKTPTKEXXXXXXXX 267
+NDG + H G G DE+ + L P I T
Sbjct: 203 LNDGGGAGSGMMLHGGGGGGGGGDDEAATESRLRRWPGDEETSIKEPTWRPLDIDYIHSS 262
Query: 268 XXXXXXXXXXTAKTPEIPTPTEKKKVPMNKVQ--VGNAPSPNLKAVKSKIGSLDNATYKP 441
TP+ P P NK A + + AV K+ S A YKP
Sbjct: 263 SSSKRAPPKDKPATPDSPAPPPPAYYFKNKPDDNAAAASAASAGAVNYKLFSELEAIYKP 322
Query: 442 GGG 450
G G
Sbjct: 323 GSG 325
>12_02_0890 +
24040981-24041125,24041264-24041317,24042675-24042872,
24043367-24043635
Length = 221
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 476 SFLFSILTLPPPGLYVALSRDPILDFTAFKFGDGA 372
SF + + P L V RDP L+FTA G+G+
Sbjct: 106 SFSYPAASTPISVLQVLRPRDPNLNFTAVLVGEGS 140
>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
Length = 904
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = -1
Query: 521 ASFLAAILGVMFPNSSFLFSILT-LPPPGLYVALSRDPILDFTAFKFGD 378
+++LAAI+ V+ + + + LP PGLY+A+S ++ A +F D
Sbjct: 504 STYLAAIIVVLVDVEYNMGTFKSHLPSPGLYIAVSILLVVTLVAVEFTD 552
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.129 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,618,474
Number of Sequences: 37544
Number of extensions: 267078
Number of successful extensions: 582
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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