Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335H05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    29   0.56 
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    28   0.73 
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    27   1.3  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    27   1.7  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         26   3.0  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    25   5.2  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    25   5.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   6.8  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   6.8  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   9.0  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    25   9.0  

>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 313 VSNVQYTEKLKQKYRTIVGTPSWAEIKKNTDCEDD 417
           V+ +QY  +L+ ++  +   P WA+ +  T+ ED+
Sbjct: 131 VNGLQYARRLRTQFERVYPVPEWAKKQDVTEEEDE 165


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
 Frame = +1

Query: 31  KFVFWSKTSL--LLICKK*TIVSPLNMKRSS-RNF-KHEINPVKDEESRLSQILFTKKQK 198
           +F+ W   +L   L  KK TI  P ++   S + F + E   ++    +  Q++FT  + 
Sbjct: 265 EFLSWFLNTLHNCLGGKKSTIAKPTSIVHYSFQGFVRIESQKIRQHAEKGEQVVFTGDRV 324

Query: 199 LIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQ 309
           +   + P   L+ ++  KP++ D+ +G     NIIPQ
Sbjct: 325 IQTNVVPFLYLTLDLPPKPIFQDEFEG-----NIIPQ 356


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 149 LTGLISCLKFLELRFIFKGDTMVYFLQISNNEVFDQKTNLRFYFQ 15
           +  +I  L  L      K     + + I  N  FD KTN RFY +
Sbjct: 3   VANIIYALFLLGPSIFLKATAQTHPIVIKGNAFFDSKTNERFYIR 47


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/63 (30%), Positives = 24/63 (38%)
 Frame = +1

Query: 214 KPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVGTPSWAEIK 393
           K  QEL D     P WT  D   Y    I       V   EK K + RT+    S  +  
Sbjct: 381 KSKQELIDPTLEGPRWTVSDPPTYAKQTIDSNICVLVPTAEKNKLEMRTLADAASAVDTS 440

Query: 394 KNT 402
           ++T
Sbjct: 441 QST 443


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 116 PETLNTRLILSKMKNHGYLKYFLPRSK 196
           PET    +I+S ++NHG  +Y L   K
Sbjct: 179 PETSPKGIIMSAVRNHGCFQYSLHNEK 205


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 91  SPLNMKRSSRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSD 237
           +P N+ R+  N K E     DEE RL ++L  + ++  +  + N++  D
Sbjct: 145 NPANILRNEANKKRERQEKSDEEQRL-RLLDEQIKRAYESAQNNEDNKD 192


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 115 SRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDNIDLKP 255
           +R  +++I  +K E  RL+     +K  +++K+K NQE   N  + P
Sbjct: 43  TRLLENDIKVMKSEFQRLTH----EKSTMLEKIKENQEKISNNKMLP 85


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 88  VSPLNMKRSSRNFKHEINPVKDEESRLSQILFTKKQKLIDKLKPNQELSDN 240
           ++ LN +  +R    ++N V++E  RLSQ+L + +  L +       LSD+
Sbjct: 434 LNQLNTEIEARQ-SEKLNEVQEETQRLSQLLISSQPALTEVKHLKLCLSDS 483


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 67  ICKK*TIVSPLNMKRSSRNFKHEINPVK 150
           +CK  T +SP+N+ R+ ++ + E+  +K
Sbjct: 305 VCKIETRMSPINLLRACQSIEQEMGRIK 332


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 113 VPETLNTRLILSKMKNHGYLKYFLP 187
           VP TL+ + +L   K   YLK FLP
Sbjct: 160 VPATLSNKSLLLAGKLRKYLKEFLP 184


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 223 QELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVGTP 375
           ++L + + LK     +DDGK    +   +  SN +  +K K+K      TP
Sbjct: 12  KDLQEKLSLKENDVVEDDGKVEENDAAEEGASNGEKKKKKKKKSSKKKKTP 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,531
Number of Sequences: 5004
Number of extensions: 35432
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)