Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335H05f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97670-1|AAC78729.1| 258|Homo sapiens eukaryotic translation in... 31 1.9
BC132812-1|AAI32813.1| 1198|Homo sapiens FNDC3A protein protein. 31 1.9
BC002719-1|AAH02719.1| 258|Homo sapiens eukaryotic translation ... 31 1.9
AL137000-1|CAI39726.2| 1142|Homo sapiens fibronectin type III do... 31 1.9
AK023388-1|BAB14555.1| 258|Homo sapiens protein ( Homo sapiens ... 31 1.9
AJ749707-1|CAG44603.1| 1134|Homo sapiens human gene expressed in... 31 1.9
AJ749706-1|CAG44602.1| 1198|Homo sapiens human gene expressed in... 31 1.9
AB023187-1|BAA76814.2| 1151|Homo sapiens KIAA0970 protein protein. 31 1.9
AY184206-1|AAO27774.1| 3212|Homo sapiens nesprin-1 beta 2 protein. 31 2.4
AY061755-1|AAL33798.1| 3321|Homo sapiens nesprin-1 beta protein. 31 2.4
AF495910-1|AAN60442.1| 8797|Homo sapiens nesprin-1 protein. 31 2.4
AL450401-4|CAI40730.1| 2963|Homo sapiens spectrin repeat contain... 31 3.2
AL450401-3|CAI40729.1| 3321|Homo sapiens spectrin repeat contain... 31 3.2
AL357081-1|CAI41322.1| 3321|Homo sapiens spectrin repeat contain... 31 3.2
AL138832-5|CAI42787.1| 2963|Homo sapiens spectrin repeat contain... 31 3.2
AL138832-4|CAI42786.1| 3321|Homo sapiens spectrin repeat contain... 31 3.2
AL078582-5|CAI42287.1| 2963|Homo sapiens spectrin repeat contain... 31 3.2
AL078582-3|CAI42284.1| 3321|Homo sapiens spectrin repeat contain... 31 3.2
AF535142-1|AAN03486.1| 8749|Homo sapiens enaptin protein. 31 3.2
Z68289-1|CAI41998.1| 696|Homo sapiens melanoma associated antig... 29 7.5
BC070072-1|AAH70072.1| 853|Homo sapiens FNDC3A protein protein. 29 7.5
BC060816-1|AAH60816.1| 853|Homo sapiens FNDC3A protein protein. 29 7.5
AK090835-1|BAC03529.1| 450|Homo sapiens protein ( Homo sapiens ... 29 7.5
BC022543-1|AAH22543.1| 217|Homo sapiens zinc finger CCHC-type a... 29 9.9
>U97670-1|AAC78729.1| 258|Homo sapiens eukaryotic translation
initiation factor eIF3, p35 subunit protein.
Length = 258
Score = 31.5 bits (68), Expect = 1.9
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 244 DLKPVWTDDDDGKYTAANIIPQA--VSNVQYTEKLKQKYRTIVGTPSWAEIKKNTDCEDD 417
D+K W DDDD K A + P+ + EK+K+K R EIKK + ++
Sbjct: 47 DVKDNWDDDDDEKKEEAEVKPEVKISEKKKIAEKIKEKERQ--QKKRQEEIKKRLEEPEE 104
Query: 418 DKLM 429
K++
Sbjct: 105 PKVL 108
>BC132812-1|AAI32813.1| 1198|Homo sapiens FNDC3A protein protein.
Length = 1198
Score = 31.5 bits (68), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 322 VQYTEKLKQKYRTIVGTPSWAEIKKNTDCEDD 417
+ Y K++ +Y +I GTPS AEI CE D
Sbjct: 341 MDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD 372
>BC002719-1|AAH02719.1| 258|Homo sapiens eukaryotic translation
initiation factor 3, subunit 1 alpha, 35kDa protein.
Length = 258
Score = 31.5 bits (68), Expect = 1.9
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 244 DLKPVWTDDDDGKYTAANIIPQA--VSNVQYTEKLKQKYRTIVGTPSWAEIKKNTDCEDD 417
D+K W DDDD K A + P+ + EK+K+K R EIKK + ++
Sbjct: 47 DVKDNWDDDDDEKKEEAEVKPEVKISEKKKIAEKIKEKERQ--QKKRQEEIKKRLEEPEE 104
Query: 418 DKLM 429
K++
Sbjct: 105 PKVL 108
>AL137000-1|CAI39726.2| 1142|Homo sapiens fibronectin type III
domain containing 3A protein.
Length = 1142
Score = 31.5 bits (68), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 322 VQYTEKLKQKYRTIVGTPSWAEIKKNTDCEDD 417
+ Y K++ +Y +I GTPS AEI CE D
Sbjct: 285 MDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD 316
>AK023388-1|BAB14555.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ13326 fis, clone OVARC1001766, highly similar to
Homo sapiens eukaryotic translation initiation factor
eIF3, p35 ).
Length = 258
Score = 31.5 bits (68), Expect = 1.9
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 244 DLKPVWTDDDDGKYTAANIIPQA--VSNVQYTEKLKQKYRTIVGTPSWAEIKKNTDCEDD 417
D+K W DDDD K A + P+ + EK+K+K R EIKK + ++
Sbjct: 47 DVKDNWDDDDDEKKEEAEVKPEVKISEKKKIAEKIKEKERQ--QKKRQEEIKKRLEEPEE 104
Query: 418 DKLM 429
K++
Sbjct: 105 PKVL 108
>AJ749707-1|CAG44603.1| 1134|Homo sapiens human gene expressed in
odontoblast protein protein.
Length = 1134
Score = 31.5 bits (68), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 322 VQYTEKLKQKYRTIVGTPSWAEIKKNTDCEDD 417
+ Y K++ +Y +I GTPS AEI CE D
Sbjct: 277 MDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD 308
>AJ749706-1|CAG44602.1| 1198|Homo sapiens human gene expressed in
odontoblast protein protein.
Length = 1198
Score = 31.5 bits (68), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 322 VQYTEKLKQKYRTIVGTPSWAEIKKNTDCEDD 417
+ Y K++ +Y +I GTPS AEI CE D
Sbjct: 341 MDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD 372
>AB023187-1|BAA76814.2| 1151|Homo sapiens KIAA0970 protein protein.
Length = 1151
Score = 31.5 bits (68), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 322 VQYTEKLKQKYRTIVGTPSWAEIKKNTDCEDD 417
+ Y K++ +Y +I GTPS AEI CE D
Sbjct: 294 MDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD 325
>AY184206-1|AAO27774.1| 3212|Homo sapiens nesprin-1 beta 2 protein.
Length = 3212
Score = 31.1 bits (67), Expect = 2.4
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +1
Query: 25 KRKFVFWSKTSLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRL-SQILFTKKQ-- 195
K + FW++ S+ T+ L M R N E + D +S L S +L T Q
Sbjct: 1230 KDRLEFWTQQSV-------TVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQLL 1282
Query: 196 --KLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVG 369
K +D ELS ID + WTD T + + + +Q +KL ++ I
Sbjct: 1283 RLKKVDTATLRSELS-RIDSQ--WTD----LLTNIPAVQEKLHQLQM-DKLPSRH-AISE 1333
Query: 370 TPSWAEIKKNTDCEDDDKLMKTVGH 444
SW + +N +D+D + ++G+
Sbjct: 1334 VMSWTSLMENAIQKDEDNIKNSIGY 1358
>AY061755-1|AAL33798.1| 3321|Homo sapiens nesprin-1 beta protein.
Length = 3321
Score = 31.1 bits (67), Expect = 2.4
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +1
Query: 25 KRKFVFWSKTSLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRL-SQILFTKKQ-- 195
K + FW++ S+ T+ L M R N E + D +S L S +L T Q
Sbjct: 1339 KDRLEFWTQQSV-------TVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQLL 1391
Query: 196 --KLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVG 369
K +D ELS ID + WTD T + + + +Q +KL ++ I
Sbjct: 1392 RLKKVDTATLRSELS-RIDSQ--WTD----LLTNIPAVQEKLHQLQM-DKLPSRH-AISE 1442
Query: 370 TPSWAEIKKNTDCEDDDKLMKTVGH 444
SW + +N +D+D + ++G+
Sbjct: 1443 VMSWTSLMENAIQKDEDNIKNSIGY 1467
>AF495910-1|AAN60442.1| 8797|Homo sapiens nesprin-1 protein.
Length = 8797
Score = 31.1 bits (67), Expect = 2.4
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +1
Query: 25 KRKFVFWSKTSLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRL-SQILFTKKQ-- 195
K + FW++ S+ T+ L M R N E + D +S L S +L T Q
Sbjct: 6815 KDRLEFWTQQSV-------TVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQLL 6867
Query: 196 --KLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVG 369
K +D ELS ID + WTD T + + + +Q +KL ++ I
Sbjct: 6868 RLKKVDTATLRSELS-RIDSQ--WTD----LLTNIPAVQEKLHQLQM-DKLPSRH-AISE 6918
Query: 370 TPSWAEIKKNTDCEDDDKLMKTVGH 444
SW + +N +D+D + ++G+
Sbjct: 6919 VMSWTSLMENAIQKDEDNIKNSIGY 6943
>AL450401-4|CAI40730.1| 2963|Homo sapiens spectrin repeat containing,
nuclear envelope 1 protein.
Length = 2963
Score = 30.7 bits (66), Expect = 3.2
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +1
Query: 25 KRKFVFWSKTSLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRL-SQILFTKKQ-- 195
K + FW++ S+ T+ L M R N E + D +S L S +L T Q
Sbjct: 958 KDRLEFWTQQSV-------TVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQLL 1010
Query: 196 --KLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVG 369
K +D ELS ID + WTD T + + + +Q +KL ++ I
Sbjct: 1011 RLKKVDTATLRSELS-RIDSQ--WTD----LLTNIPAVQEKLHQLQM-DKLPSRH-AISE 1061
Query: 370 TPSWAEIKKNTDCEDDDKLMKTVGH 444
SW + +N +D+D + ++G+
Sbjct: 1062 VMSWISLMENVIQKDEDNIKNSIGY 1086
>AL450401-3|CAI40729.1| 3321|Homo sapiens spectrin repeat containing,
nuclear envelope 1 protein.
Length = 3321
Score = 30.7 bits (66), Expect = 3.2
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +1
Query: 25 KRKFVFWSKTSLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRL-SQILFTKKQ-- 195
K + FW++ S+ T+ L M R N E + D +S L S +L T Q
Sbjct: 1339 KDRLEFWTQQSV-------TVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQLL 1391
Query: 196 --KLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVG 369
K +D ELS ID + WTD T + + + +Q +KL ++ I
Sbjct: 1392 RLKKVDTATLRSELS-RIDSQ--WTD----LLTNIPAVQEKLHQLQM-DKLPSRH-AISE 1442
Query: 370 TPSWAEIKKNTDCEDDDKLMKTVGH 444
SW + +N +D+D + ++G+
Sbjct: 1443 VMSWISLMENVIQKDEDNIKNSIGY 1467
>AL357081-1|CAI41322.1| 3321|Homo sapiens spectrin repeat containing,
nuclear envelope 1 protein.
Length = 3321
Score = 30.7 bits (66), Expect = 3.2
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +1
Query: 25 KRKFVFWSKTSLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRL-SQILFTKKQ-- 195
K + FW++ S+ T+ L M R N E + D +S L S +L T Q
Sbjct: 1339 KDRLEFWTQQSV-------TVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQLL 1391
Query: 196 --KLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVG 369
K +D ELS ID + WTD T + + + +Q +KL ++ I
Sbjct: 1392 RLKKVDTATLRSELS-RIDSQ--WTD----LLTNIPAVQEKLHQLQM-DKLPSRH-AISE 1442
Query: 370 TPSWAEIKKNTDCEDDDKLMKTVGH 444
SW + +N +D+D + ++G+
Sbjct: 1443 VMSWISLMENVIQKDEDNIKNSIGY 1467
>AL138832-5|CAI42787.1| 2963|Homo sapiens spectrin repeat containing,
nuclear envelope 1 protein.
Length = 2963
Score = 30.7 bits (66), Expect = 3.2
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +1
Query: 25 KRKFVFWSKTSLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRL-SQILFTKKQ-- 195
K + FW++ S+ T+ L M R N E + D +S L S +L T Q
Sbjct: 958 KDRLEFWTQQSV-------TVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQLL 1010
Query: 196 --KLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVG 369
K +D ELS ID + WTD T + + + +Q +KL ++ I
Sbjct: 1011 RLKKVDTATLRSELS-RIDSQ--WTD----LLTNIPAVQEKLHQLQM-DKLPSRH-AISE 1061
Query: 370 TPSWAEIKKNTDCEDDDKLMKTVGH 444
SW + +N +D+D + ++G+
Sbjct: 1062 VMSWISLMENVIQKDEDNIKNSIGY 1086
>AL138832-4|CAI42786.1| 3321|Homo sapiens spectrin repeat containing,
nuclear envelope 1 protein.
Length = 3321
Score = 30.7 bits (66), Expect = 3.2
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +1
Query: 25 KRKFVFWSKTSLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRL-SQILFTKKQ-- 195
K + FW++ S+ T+ L M R N E + D +S L S +L T Q
Sbjct: 1339 KDRLEFWTQQSV-------TVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQLL 1391
Query: 196 --KLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVG 369
K +D ELS ID + WTD T + + + +Q +KL ++ I
Sbjct: 1392 RLKKVDTATLRSELS-RIDSQ--WTD----LLTNIPAVQEKLHQLQM-DKLPSRH-AISE 1442
Query: 370 TPSWAEIKKNTDCEDDDKLMKTVGH 444
SW + +N +D+D + ++G+
Sbjct: 1443 VMSWISLMENVIQKDEDNIKNSIGY 1467
>AL078582-5|CAI42287.1| 2963|Homo sapiens spectrin repeat containing,
nuclear envelope 1 protein.
Length = 2963
Score = 30.7 bits (66), Expect = 3.2
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +1
Query: 25 KRKFVFWSKTSLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRL-SQILFTKKQ-- 195
K + FW++ S+ T+ L M R N E + D +S L S +L T Q
Sbjct: 958 KDRLEFWTQQSV-------TVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQLL 1010
Query: 196 --KLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVG 369
K +D ELS ID + WTD T + + + +Q +KL ++ I
Sbjct: 1011 RLKKVDTATLRSELS-RIDSQ--WTD----LLTNIPAVQEKLHQLQM-DKLPSRH-AISE 1061
Query: 370 TPSWAEIKKNTDCEDDDKLMKTVGH 444
SW + +N +D+D + ++G+
Sbjct: 1062 VMSWISLMENVIQKDEDNIKNSIGY 1086
>AL078582-3|CAI42284.1| 3321|Homo sapiens spectrin repeat containing,
nuclear envelope 1 protein.
Length = 3321
Score = 30.7 bits (66), Expect = 3.2
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +1
Query: 25 KRKFVFWSKTSLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRL-SQILFTKKQ-- 195
K + FW++ S+ T+ L M R N E + D +S L S +L T Q
Sbjct: 1339 KDRLEFWTQQSV-------TVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQLL 1391
Query: 196 --KLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVG 369
K +D ELS ID + WTD T + + + +Q +KL ++ I
Sbjct: 1392 RLKKVDTATLRSELS-RIDSQ--WTD----LLTNIPAVQEKLHQLQM-DKLPSRH-AISE 1442
Query: 370 TPSWAEIKKNTDCEDDDKLMKTVGH 444
SW + +N +D+D + ++G+
Sbjct: 1443 VMSWISLMENVIQKDEDNIKNSIGY 1467
>AF535142-1|AAN03486.1| 8749|Homo sapiens enaptin protein.
Length = 8749
Score = 30.7 bits (66), Expect = 3.2
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +1
Query: 25 KRKFVFWSKTSLLLICKK*TIVSPLNMKRSSRNFKHEINPVKDEESRL-SQILFTKKQ-- 195
K + FW++ S+ T+ L M R N E + D +S L S +L T Q
Sbjct: 6744 KDRLEFWTQQSV-------TVPQELEMVRDHLNAFLEFSKEVDAQSSLKSSVLSTGNQLL 6796
Query: 196 --KLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQYTEKLKQKYRTIVG 369
K +D ELS ID + WTD T + + + +Q +KL ++ I
Sbjct: 6797 RLKKVDTATLRSELS-RIDSQ--WTD----LLTNIPAVQEKLHQLQM-DKLPSRH-AISE 6847
Query: 370 TPSWAEIKKNTDCEDDDKLMKTVGH 444
SW + +N +D+D + ++G+
Sbjct: 6848 VMSWISLMENVIQKDEDNIKNSIGY 6872
>Z68289-1|CAI41998.1| 696|Homo sapiens melanoma associated antigen
(mutated) 1-like 1 protein.
Length = 696
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 181 FTKKQKLIDKLKPNQELSDNID-LKPVWTDDDDGKYTAANIIPQAV 315
F + +L + +K QE+ + ID + P W DD K+ ++P+A+
Sbjct: 600 FEDEDQLDEVVKYLQEVCNQIDQIMPTWIKDDKIKFILEVLLPEAI 645
>BC070072-1|AAH70072.1| 853|Homo sapiens FNDC3A protein protein.
Length = 853
Score = 29.5 bits (63), Expect = 7.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 337 KLKQKYRTIVGTPSWAEIKKNTDCEDD 417
K++ +Y +I GTPS AEI CE D
Sbjct: 1 KVQAEYNSIKGTPSEAEIFTTLSCEPD 27
>BC060816-1|AAH60816.1| 853|Homo sapiens FNDC3A protein protein.
Length = 853
Score = 29.5 bits (63), Expect = 7.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 337 KLKQKYRTIVGTPSWAEIKKNTDCEDD 417
K++ +Y +I GTPS AEI CE D
Sbjct: 1 KVQAEYNSIKGTPSEAEIFTTLSCEPD 27
>AK090835-1|BAC03529.1| 450|Homo sapiens protein ( Homo sapiens
cDNA FLJ33516 fis, clone BRAMY2005684, moderately
similar to UBE-1c2. ).
Length = 450
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 181 FTKKQKLIDKLKPNQELSDNID-LKPVWTDDDDGKYTAANIIPQAV 315
F + +L + +K QE+ + ID + P W DD K+ ++P+A+
Sbjct: 354 FEDEDQLDEVVKYLQEVCNQIDQIMPTWIKDDKIKFILEVLLPEAI 399
>BC022543-1|AAH22543.1| 217|Homo sapiens zinc finger CCHC-type and
RNA binding motif 1 protein.
Length = 217
Score = 29.1 bits (62), Expect = 9.9
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Frame = +1
Query: 193 QKLIDKLKPNQELSDNIDLKPVWTDDDDGKYTAANIIPQAVSNVQ-YTEKLKQKYRTIVG 369
QK +K K + +++ V +D+G+ A + + QA++ Q E+ ++K++ G
Sbjct: 131 QKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEEEQKKWKPSSG 190
Query: 370 TPSWAE------IKKNTDCEDDDKL 426
PS ++ IKK+T D+++L
Sbjct: 191 VPSTSDDSRRPRIKKSTYFSDEEEL 215
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,517,143
Number of Sequences: 237096
Number of extensions: 1087468
Number of successful extensions: 2481
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2481
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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