Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335H04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   5.2  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   9.0  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   9.0  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 76   VRDTCIKLIKQVLLTNSTIFNV 11
            + DTC+K+ K+ L+TN+T+  V
Sbjct: 4598 LHDTCLKIQKRELVTNTTLQEV 4619


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +3

Query: 276 NTQTKLLCLSHRKQLTPLPGYTKKKLSYDASVASIKNKCCCSY*SMFLSLVTPIVINEVI 455
           NT T +   S     TP+   T    S   + +S+ N       S  L+  TPI  + V+
Sbjct: 667 NTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVL 726

Query: 456 NIS 464
           N S
Sbjct: 727 NSS 729



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +3

Query: 276 NTQTKLLCLSHRKQLTPLPGYTKKKLSYDASVASIKNKCCCSY*SMFLSLVTPIVINEVI 455
           NT T +   S     TP+   T    S   + +S+ N       S  L+  TPI  + V+
Sbjct: 715 NTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVL 774

Query: 456 NIS 464
           N S
Sbjct: 775 NSS 777



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +3

Query: 276  NTQTKLLCLSHRKQLTPLPGYTKKKLSYDASVASIKNKCCCSY*SMFLSLVTPIVINEVI 455
            NT T +   S     TP+   T    S   + +S+ N       S  L+  TPI  + V+
Sbjct: 1759 NTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVL 1818

Query: 456  NIS 464
            N S
Sbjct: 1819 NSS 1821



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +3

Query: 276  NTQTKLLCLSHRKQLTPLPGYTKKKLSYDASVASIKNKCCCSY*SMFLSLVTPIVINEVI 455
            NT T +   S     TP+   T    S   + +S+ N       S  L+  TPI  + V+
Sbjct: 2395 NTSTPITSSSVLNSSTPITSSTVVNTSTSITSSSVLNSSTPITSSSVLNSSTPITSSTVV 2454

Query: 456  NIS 464
            N S
Sbjct: 2455 NSS 2457



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 276 NTQTKLLCLSHRKQLTPLPGYTKKKLSYDASVASIKNKCCCSY*SMFLSLVTPIVINEVI 455
           NT T +   S     TP+   T    S   + +S+ N       S  ++  TPI  + V+
Sbjct: 511 NTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVL 570

Query: 456 NIS 464
           N S
Sbjct: 571 NSS 573



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +3

Query: 276  NTQTKLLCLSHRKQLTPLPGYTKKKLSYDASVASIKNKCCCSY*SMFLSLVTPIVINEVI 455
            NT T +   S     TP+   T    S   + +S+ N       S  L+  TPI  + V+
Sbjct: 1567 NTSTPITSSSVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVL 1626

Query: 456  NIS 464
            N S
Sbjct: 1627 NSS 1629



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 276  NTQTKLLCLSHRKQLTPLPGYTKKKLSYDASVASIKNKCCCSY*SMFLSLVTPIVINEVI 455
            NT T +   S     TP+   T    S   + +S+ N       S  ++  TPI  + V+
Sbjct: 2623 NTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVL 2682

Query: 456  NIS 464
            N S
Sbjct: 2683 NSS 2685



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 276  NTQTKLLCLSHRKQLTPLPGYTKKKLSYDASVASIKNKCCCSY*SMFLSLVTPIVINEVI 455
            NT T +   S     TP+   T    S   + +S+ N       S  ++  TPI  + V+
Sbjct: 2851 NTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVL 2910

Query: 456  NIS 464
            N S
Sbjct: 2911 NSS 2913



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 276  NTQTKLLCLSHRKQLTPLPGYTKKKLSYDASVASIKNKCCCSY*SMFLSLVTPIVINEVI 455
            NT T +   S     TP+   T    S   + +S+ N       S  ++  TPI  + V+
Sbjct: 2947 NTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVL 3006

Query: 456  NIS 464
            N S
Sbjct: 3007 NSS 3009



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 276  NTQTKLLCLSHRKQLTPLPGYTKKKLSYDASVASIKNKCCCSY*SMFLSLVTPIVINEVI 455
            N+ T +   S     TP+   T    S   + +S+ N       S  L+  TPI  + V+
Sbjct: 3187 NSSTPITSSSVLNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSVLNSSTPITSSSVL 3246

Query: 456  NIS 464
            N S
Sbjct: 3247 NSS 3249



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 276  NTQTKLLCLSHRKQLTPLPGYTKKKLSYDASVASIKNKCCCSY*SMFLSLVTPIVINEVI 455
            NT T +   +     TP+   T    S   + +S+ N       S  L+  TPI  + V+
Sbjct: 3283 NTSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVL 3342

Query: 456  NIS 464
            N S
Sbjct: 3343 NSS 3345


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 321 TPLPGYTKKKLSY 359
           T LPGYTKK++ Y
Sbjct: 609 TKLPGYTKKEIQY 621


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 166 DVDTKIYKNRYVSSLYDSVEK*INK 92
           ++ + +Y+NRY  SL  ++ K + K
Sbjct: 354 EIRSSLYQNRYTGSLLHAINKTVTK 378


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 324 PLPGYTKKKLSYDASVASIKNKC 392
           PLPG       YD  V S+  KC
Sbjct: 125 PLPGQEATHTDYDTVVFSLNKKC 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,305
Number of Sequences: 5004
Number of extensions: 37159
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)