Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335H04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   1.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   3.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.3  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 169 SDVDTKIYKNRYVSSLYDSVEK*INKCAVKYVRDTCIKLIKQV 41
           ++VD +        S+ DS +K  NKC      D C K  + V
Sbjct: 73  AEVDVQKALRHLPRSMQDSTKKLFNKCKSIQNEDPCEKAYQLV 115


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 250 TVWIFGSDRTLKQNCYV 300
           TVW+ G+ R  +Q C V
Sbjct: 91  TVWVAGAQRGNEQRCTV 107


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 407 LIRTATFIFNTGNTG 363
           +I+T  FI+N+ NTG
Sbjct: 98  MIKTPIFIYNSFNTG 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,226
Number of Sequences: 438
Number of extensions: 2717
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)