Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335G12f
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    27   0.99 
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   1.3  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   2.3  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   3.0  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   3.0  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   4.0  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   7.0  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    24   9.3  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 372 TASVLSPYDASRXSPCSLDAHLFSLSDSDILST*VKHV 259
           T SVL  ++ S  S C+L   LF     D+LS   K V
Sbjct: 58  TTSVLKHHNVSNTSYCNLSPSLFIKFAEDVLSNLAKRV 95


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 184 QPPGHGEDGDCNMPHEPDQPRQVFGHVLNSSGQDV 288
           +PP   EDG   M  +P +  ++   V++S+  DV
Sbjct: 235 EPPEDSEDGISEMNEDPSESGEMIEQVISSTMNDV 269


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 284 SCPLELSTCPKTCRGWS 234
           +CPLEL+TC  T + W+
Sbjct: 169 TCPLELTTCAITFKFWT 185


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 306 FSLSDSDILST*VKHVSKDLSGLVWFMRHITISIFSVS 193
           + + +SDI S   KH+  D+S + W    + +   +++
Sbjct: 434 YPVDESDITSLFQKHIMSDISAIPWIDEPVEVETKTIA 471


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 308 RCASSEQGDXLLASYGDKTDAVMRPLAF 391
           R  +SE    L  +Y  KTD+ ++PLAF
Sbjct: 95  RLFASEDRQWLTLTYKTKTDSKIQPLAF 122


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 233 QTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDXLLASYGDKTDAVMRP 382
           +  P++S D   +   +   SD+  R  SSE+ D L+ +  D+ D  ++P
Sbjct: 18  KAEPEQSADFSASHKKRGPVSDRSSRRTSSEEVD-LMPNVDDEVDGDVKP 66


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 270 VKHVSKDLSGLVW 232
           V HV+KD  GLVW
Sbjct: 310 VAHVTKDAKGLVW 322


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +2

Query: 224 LMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDXLLASYGDKTDAVMRPLAFVPPL 403
           + N+ SPD   D     +DK+ ++   +     E G  LLA     TD     +  VP +
Sbjct: 160 IRNEDSPDSWSD--YVALDKLLQNGVNRIMV--EGGAELLAKAFGSTDIDAYVVTIVPKI 215

Query: 404 LLXRNTTKMSKL 439
               NTT++  L
Sbjct: 216 FSCSNTTEIKNL 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,594
Number of Sequences: 5004
Number of extensions: 34599
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)