Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335G12f
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 54 4e-08
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278... 54 5e-08
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 32 0.18
12_01_1061 + 10964571-10964927,10965393-10965425,10965865-109659... 29 1.3
08_02_0244 - 14717897-14718037,14719054-14719155,14719238-147193... 29 1.7
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 29 2.3
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 29 2.3
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 28 3.9
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 27 5.2
02_02_0400 + 9836045-9837115,9837474-9838577 27 5.2
03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042 27 6.9
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 27 9.1
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719 27 9.1
07_03_1160 - 24430240-24431268 27 9.1
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 54.4 bits (125), Expect = 4e-08
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Frame = +2
Query: 5 FITTQLAPVWRD-FRGLVKVKMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVLKD 181
F+ LA V+RD V + +VPYG + DGK S HG++EC+ N V+AC + D
Sbjct: 48 FVVGSLAKVFRDGLLDAVDLSLVPYGNARVK--DGKISCQVEHGSEECFLNTVEACAI-D 104
Query: 182 RNLQDTEKMEIVICL--MNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDXLLASYG 355
+ C+ + + ++C +++ + + C E+G L YG
Sbjct: 105 AWPDLRVHFRFIYCVEDLVVNHKQREWESCFGKLN--LDPKPVTDCYKGERGHQLSLKYG 162
Query: 356 DKTDAVMRPLAFVP 397
+TDA+ P +VP
Sbjct: 163 RQTDALQPPHKYVP 176
>01_06_1209 +
35427160-35427318,35427436-35427501,35427737-35427877,
35428342-35428434,35428530-35428646,35428890-35429054
Length = 246
Score = 54.0 bits (124), Expect = 5e-08
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Frame = +2
Query: 5 FITTQLAPVWRD-FRGLVKVKMVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVLKD 181
F+ LA ++RD +V +++VP+G +V S C HG +EC N ++ACV+
Sbjct: 15 FVVNDLARIFRDGLSPVVDLRLVPFGNG---RVSPDGSITCQHGEEECQLNAIEACVI-- 69
Query: 182 RNLQDTEK-MEIVICLMNQTSPDK--SLDTCLTQVDKMSESDKLKRCASSEQGDXLLASY 352
R D E+ + C+ + K + +C + S+ + C +S G L Y
Sbjct: 70 RLWPDAEQHFPFINCIEHLALTQKWNAWQSCFQETGLASQ--PVMDCYNSGYGTQLQLQY 127
Query: 353 GDKTDAVMRPLAFVP 397
+T+A+ P FVP
Sbjct: 128 AAETNALQPPHQFVP 142
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 32.3 bits (70), Expect = 0.18
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Frame = +2
Query: 32 WRDFRGLVKVKMVPYGKSTHDKVDGKWSFIC------HHGADECYGNKVQACVLKDRNLQ 193
W R +V +P+ H+K D W HHGAD+ N KD N+
Sbjct: 144 WPKSRDIVWKANIPHTHLAHEKSDQNWMIDAGGGTHFHHGADKYIANIANMLKFKDNNIN 203
Query: 194 DTEKMEIVI 220
+ + V+
Sbjct: 204 NEGMLRTVL 212
>12_01_1061 +
10964571-10964927,10965393-10965425,10965865-10965909,
10966209-10966220
Length = 148
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 179 DRNLQDTEKMEIVICLMNQTSPDKSLDTCLTQV 277
D NL TEK IC+ Q S +K + + +T V
Sbjct: 107 DTNLDSTEKSPATICISKQRSIEKMVTSTITSV 139
>08_02_0244 -
14717897-14718037,14719054-14719155,14719238-14719309,
14719369-14719480,14719640-14719707,14719801-14719908,
14720659-14721078,14722077-14722161,14723068-14723147,
14723336-14723413,14724074-14724213,14724324-14724738
Length = 606
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 378 LITASVLSPYDASRXSPCSLDAHLFSLSDSDILST*VKHVSKDLSGLVWFMRHITI 211
++ +V P ++ CS + + L DI+S + VS D+S L +R I +
Sbjct: 198 MVAVAVAQPQHGTQTVSCSKCRYQYELFSGDIMSIESEEVSMDISALDKALRFINV 253
>04_04_1242 -
32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 321 LDAHLFSLSDSDILST*VKHVSKDLSGLVWFMR--HITISIFSV 196
LD L +S+ LS+ + + SGL+W H+ IS+FSV
Sbjct: 115 LDLVLVEKDNSEDLSSTSRQIHSSGSGLIWLNEHSHLLISVFSV 158
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 169 RPEGPQPPGHGEDGDCNMPHEPDQP 243
RP P PP ED + PH PD P
Sbjct: 118 RPPPPPPPHPPEDPPPHPPHPPDHP 142
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 27.9 bits (59), Expect = 3.9
Identities = 20/78 (25%), Positives = 31/78 (39%)
Frame = +2
Query: 71 PYGKSTHDKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVICLMNQTSPDK 250
PYG + + C H A G ++ A VL+ D+ + CL+N S
Sbjct: 624 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQY-DSSAYFVANCLINMYSKCG 682
Query: 251 SLDTCLTQVDKMSESDKL 304
+DT D MS+ +
Sbjct: 683 DVDTARHVFDSMSQKSAI 700
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 194 DTEKMEIVICLMNQTSPDKSLDTCLTQVD-KMSESD 298
+T+ E+V + S DK LD+ TQVD + SE D
Sbjct: 307 ETDGFEVVDTPLTTDSDDKRLDSTTTQVDERCSECD 342
>02_02_0400 + 9836045-9837115,9837474-9838577
Length = 724
Score = 27.5 bits (58), Expect = 5.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 296 PTPTSCPLELSTCPKTCRGWSGS 228
PT S PL + CP C W+ S
Sbjct: 223 PTLASAPLAMVPCPAWCNHWNSS 245
>03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042
Length = 511
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 326 VHWMRIFSVYPTPTSCPLELSTCPKTCRGWSGS 228
V W + +YP P EL T +T R WSGS
Sbjct: 359 VSWGYMVHLYPAAVP-PHELQTPLRTFRAWSGS 390
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 26.6 bits (56), Expect = 9.1
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = +2
Query: 185 NLQDTEKMEIVICLMNQTSPDKSLDTCLTQVDKMSESDKLKRCASSEQGDXLLASYGDKT 364
+L+ +K+ + L+ K + +T + K + DK+K + + + + D
Sbjct: 137 SLKKPKKVPLPNMLVPSLKEKKEMSGSITLLLK-HKGDKIKEATNVK----VPVAVHDHF 191
Query: 365 DAVMRPLAFVPPLLLXRNTTKMSKLK 442
+ + RPLA PP+ R TT+ +LK
Sbjct: 192 NRMARPLAPKPPISDFRRTTRKKRLK 217
>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
Length = 780
Score = 26.6 bits (56), Expect = 9.1
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -2
Query: 329 LVHWMRIFSVYPTPTSCPLELSTC 258
L+HW+RI+++ P S + ++ C
Sbjct: 740 LIHWLRIWAILQKPDSRDMVVAAC 763
>07_03_1160 - 24430240-24431268
Length = 342
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 172 PEGPQPPGHGEDGDCNMPHEPDQPRQ 249
P+GP P + N P +PDQP Q
Sbjct: 262 PDGPPKPDQPPQPNPNGPPKPDQPPQ 287
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 172 PEGPQPPGHGEDGDCNMPHEPDQPRQ 249
P GP P + +MP +PDQP Q
Sbjct: 290 PNGPSKPDQPPRPNPDMPPKPDQPPQ 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,749
Number of Sequences: 37544
Number of extensions: 275133
Number of successful extensions: 840
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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