Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335G11f
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 30 0.81
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 30 0.81
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 29 2.5
U29380-4|AAA68738.1| 646|Caenorhabditis elegans Hypothetical pr... 28 3.3
AL034392-4|CAA22307.2| 203|Caenorhabditis elegans Hypothetical ... 28 3.3
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 7.6
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 7.6
AC006662-5|AAF39894.1| 501|Caenorhabditis elegans Hypothetical ... 27 7.6
Z32683-3|CAA83620.1| 124|Caenorhabditis elegans Hypothetical pr... 27 10.0
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 30.3 bits (65), Expect = 0.81
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 251 MSTVNYFLFSQNNAHVCDVCECTYDTESKVRTHAKR 144
+ST + SQ+N C +C +Y S++R H KR
Sbjct: 254 LSTHKARVHSQSNRFECTICHKSYPVPSELRKHIKR 289
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -3
Query: 203 CDVCECTYDTESKVRTHAKRHYLR*VRYLHMW 108
CD C + +E +++H RH+ L +W
Sbjct: 86 CDNCSLVFQSEKSLQSHIIRHHQEDADELEVW 117
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 30.3 bits (65), Expect = 0.81
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 251 MSTVNYFLFSQNNAHVCDVCECTYDTESKVRTHAKR 144
+ST + SQ+N C +C +Y S++R H KR
Sbjct: 372 LSTHKARVHSQSNRFECTICHKSYPVPSELRKHIKR 407
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -3
Query: 203 CDVCECTYDTESKVRTHAKRHYLR*VRYLHMW 108
CD C + +E +++H RH+ L +W
Sbjct: 204 CDNCSLVFQSEKSLQSHIIRHHQEDADELEVW 235
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 28.7 bits (61), Expect = 2.5
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = -3
Query: 239 NYFLFSQNNAHVCDVCECTYDTESKVRTHAKRH 141
++ + + H CD+C+ + + S ++TH + H
Sbjct: 554 HHLVHTGERPHRCDICDKRFSSTSNLKTHLRLH 586
>U29380-4|AAA68738.1| 646|Caenorhabditis elegans Hypothetical
protein ZK546.5 protein.
Length = 646
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = -3
Query: 203 CDVCECTYDTESKVRTHAKRHYLR*VRYLHMWAHNTTYRSSTYVLRAVD 57
C++C + + K+R H H+ R +Y+ + + ++ S L D
Sbjct: 275 CELCSLVFPDDGKLRAHVTSHHTRRKKYICKFCGHISHSMSELNLHKND 323
>AL034392-4|CAA22307.2| 203|Caenorhabditis elegans Hypothetical
protein Y40B1A.4 protein.
Length = 203
Score = 28.3 bits (60), Expect = 3.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 221 QNNAHVCDVCECTYDTESKVRTHAKRH 141
++ H+C +C TY S +R H + H
Sbjct: 103 KSRIHICHLCNKTYGKTSHLRAHLRGH 129
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -3
Query: 209 HVCDVCECTYDTESKVRTHAKRHYLR*VRYLHMWAHNTTYR 87
H C C T+ TE ++ HA+ H + ++ + + TY+
Sbjct: 503 HTCIKCGKTFGTEFMLKHHAQSHTTQTAQFANYLQMSATYQ 543
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -3
Query: 209 HVCDVCECTYDTESKVRTHAKRHYLR*VRYLHMWAHNTTYR 87
H C C T+ TE ++ HA+ H + ++ + + TY+
Sbjct: 503 HTCIKCGKTFGTEFMLKHHAQSHTTQTAQFANYLQMSATYQ 543
>AC006662-5|AAF39894.1| 501|Caenorhabditis elegans Hypothetical
protein H23L24.2 protein.
Length = 501
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 227 FSQNNAHVCDVCECTYDTESKVRTHAKRHYLR*VRYLHMWAHNT 96
F +N + D+ +D E +RT K+H R L NT
Sbjct: 434 FELDNCKIEDITNAMFDNEVYIRTEIKQHISDLCRLLKSMPRNT 477
>Z32683-3|CAA83620.1| 124|Caenorhabditis elegans Hypothetical
protein R07E5.5 protein.
Length = 124
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 227 FSQNNAHVCDVCECTYDTESKVRTHAKRH 141
F + N+ CD+CE + T ++ H K +
Sbjct: 22 FYRKNSGTCDLCEKNFKTSEELVEHKKNY 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,250,576
Number of Sequences: 27780
Number of extensions: 209358
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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