Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335G08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.3  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   3.0  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   3.9  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   6.8  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   9.0  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   9.0  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   9.0  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   9.0  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   9.0  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = +3

Query: 21   LQRCKIWSYPMCKICFFFLICLTFYAFDVEKLY**IYIHLNKCICSMAFLQYF 179
            ++RC ++ +P  ++ F FL+   F+  + E L   + ++        ++L +F
Sbjct: 3777 IRRCFLYIFPEDRVLFLFLLMFFFFPKETESLRKLLIVNGKTLELEQSYLNFF 3829


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 165 KPLNKYTYLNECKFINIISRHQK 97
           K L KYT LN   F  I+ +H K
Sbjct: 110 KKLEKYTRLNLTGFFKIVKKHDK 132


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/49 (24%), Positives = 29/49 (59%)
 Frame = +1

Query: 94  MLLMSRNYINKFTFI*ISVFVQWLFCNIFIVISQELRAIQNKML*KVFI 240
           +LL+  +Y   FT+I ++VF+     +I++ +S+ L  +   ++  +F+
Sbjct: 233 LLLIGLSYYFHFTWIGLAVFITMDTSDIWLALSKCLNYVNTVIVYPIFV 281


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 2/19 (10%)
 Frame = -3

Query: 111 SRHQKHKRSDKLK--KKNK 61
           +R+Q+ KRSDKLK  KKN+
Sbjct: 108 ARNQERKRSDKLKTMKKNR 126


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 108 RHQKHKRSDKLKKKNKFYTLD 46
           + +K ++ DKLKKK+K   LD
Sbjct: 147 KKEKKEKKDKLKKKSKRLKLD 167


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 138 NECKFINIISRHQKHKRSDKLKKKNKF 58
           NE + + +ISR   +   + LK+K KF
Sbjct: 623 NEWELVEVISRRVLNTSENDLKRKKKF 649


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 471 GYKITAILVDDFYY 512
           GY  ++ L+DDFYY
Sbjct: 62  GYNASSSLIDDFYY 75


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 129 YIHLNKCICSMAFLQYFYCDFT 194
           Y+ +  C+C+     +FY DFT
Sbjct: 371 YLQIVDCLCTQKDPLFFYTDFT 392


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 473 TLSTVHCMNINIFFNEPGIVYRIK 402
           TL   +C+ +   FN P + Y IK
Sbjct: 700 TLRMENCLELKSSFNRPNLFYEIK 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,335
Number of Sequences: 5004
Number of extensions: 32484
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)