Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335G08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine re...    35   0.031
Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U80451-4|AAB37839.1|  128|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF036688-7|AAB88315.1|  128|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine
           receptor, class sx protein5 protein.
          Length = 314

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 42  SYPMCKICFFFLICLTFYAFDVEKLY**IYIHLNKCICSMAFLQYFYC 185
           SY  C +CF  +ICL F   +   L+  I +  N+C  +++   +F C
Sbjct: 47  SYLQCALCFSHIICLLFELPNAGLLFTGIQLKRNECFSAISIYVFFIC 94


>Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical
           protein T10B10.3 protein.
          Length = 741

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 351 CFRICENLFSVGKQCQILYAVNYPWLIKKYIYVHTMHSR*GYKITAILVDDFYYXLY 521
           CF++ E+  S   + + L   NY   + KY   HT +S  G K T +  + F+  L+
Sbjct: 336 CFKVIESFHSDNMKLRYLVMTNYNVYVFKY-RTHTQNSSPG-KTTNLSSEGFFIPLF 390


>U80451-4|AAB37839.1|  128|Caenorhabditis elegans Hypothetical
           protein F11G11.4 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 111 SRHQKHKRSDKLKKKNKFYTLDMTIFC--IFVGI 16
           S+ +K +++DK + +N  + ++ TIFC  I VG+
Sbjct: 57  SKTKKVRKADKFESQNFLFRIEGTIFCAGIVVGL 90


>AF036688-7|AAB88315.1|  128|Caenorhabditis elegans Hypothetical
           protein C24D10.2 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 111 SRHQKHKRSDKLKKKNKFYTLDMTIFC--IFVGI 16
           S+ +K +++DK + +N  + ++ TIFC  I VG+
Sbjct: 57  SKTKKVRKTDKFESQNFLFRIEGTIFCAGIVVGL 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,002,898
Number of Sequences: 27780
Number of extensions: 178894
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)