Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335G08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   5.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   5.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   5.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   5.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   5.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   7.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.7  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 433 KNIFMFIQCTVDK 471
           +N+ +FI+CT+ K
Sbjct: 57  ENVLLFIECTMKK 69


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 186 HNKNIAKKPLNKYTYLNECK 127
           HN N  K   N   Y N CK
Sbjct: 91  HNNNNYKYNYNNNNYNNNCK 110


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 186 HNKNIAKKPLNKYTYLNECK 127
           HN N  K   N   Y N CK
Sbjct: 91  HNNNNYKYNYNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 186 HNKNIAKKPLNKYTYLNECK 127
           HN N  K   N   Y N CK
Sbjct: 91  HNNNNYKYNYNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 186 HNKNIAKKPLNKYTYLNECK 127
           HN N  K   N   Y N CK
Sbjct: 91  HNNNNYKYNYNNNNYNNNCK 110


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 408 AVNYPWLIKKYIYVHT 455
           A + PWL++ +I  HT
Sbjct: 51  AFSRPWLLQGHIRTHT 66


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 183 NKNIAKKPLNKYTYLNECK 127
           NK I      KY Y N CK
Sbjct: 87  NKTIHNNNNYKYNYNNNCK 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,918
Number of Sequences: 438
Number of extensions: 1986
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)