Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335G07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 26 3.0
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 26 3.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 5.2
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 6.8
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce... 25 6.8
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 9.0
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 25 9.0
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 9.0
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 9.0
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 26.6 bits (56), Expect = 2.2
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = -1
Query: 347 LTKSFNLYTRSCSS*VPQVNLT-SPPSSVFNVTVY------NTFSELALGELVTSNFHST 189
+TK +L + + VP V + SP S F V++ N F + GELV NF
Sbjct: 398 ITKLQSLENSTKNDNVPLVTHSPSPMHSSFTVSIKPTQLSENVFDPTSSGELVIHNFGFL 457
Query: 188 SITLGKTLTIL*EAI 144
S + + + +L E++
Sbjct: 458 SFSASRPMNLLVESV 472
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -1
Query: 278 PPSSVFNV-TVYNTFSELALGELVTS 204
P +S N+ +YNTFS++A+GE + S
Sbjct: 764 PSNSPVNMQAIYNTFSKMAVGEPMES 789
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -1
Query: 392 PTFSQENSHFVLSQCLTKSFNLYTRSCSS*VPQVNL-----TSPPSSVFN 258
P F EN+ ++ L ++ + Y S +PQ N+ T+PP S+ +
Sbjct: 474 PPFEPENTFSMIPHRLQQAISYYANSPEGDLPQPNIYLTRYTNPPKSLLD 523
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 5.2
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -1
Query: 404 NISTPTFSQ-ENSHFVLSQCLTKS-FNLYTR--SCSS*VPQVNLTSPPSSVFNVTVYNTF 237
+++TPT + NS + T S FN + + S+ P N T P+S F + +NT
Sbjct: 600 SVTTPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTT 659
Query: 236 SELALGELVTSNFHSTSI 183
S L T + +S+ +
Sbjct: 660 SGLPTSSASTPSSNSSIV 677
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -1
Query: 407 NNISTPTFSQENSHFVLSQCLTKS-FNLYTR--SCSS*VPQVNLTSPPSSVFNVTVYNTF 237
++ STP+ NS V + T S FN + + S+ P N T P+S F + +NT
Sbjct: 665 SSASTPS---SNSSIVPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTT 721
Query: 236 SELALGELVTSNFHSTS 186
S L + T +S++
Sbjct: 722 SGLPTSSVSTPLSNSSA 738
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 148 ASHNIVKVLPNVIDVEWKLEVTSSPNASSENVLYTVTLKTDDGGDV 285
+SH I + P ++ E T+ + S + YT+T KTD G DV
Sbjct: 61 SSHYISTIYP--VNKTHHTEYTTLTDGSIDT--YTITAKTDTGTDV 102
>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 328 KLKDLVRHCERTKCEFS 378
K +DL+++CER K FS
Sbjct: 194 KGRDLIKYCEREKISFS 210
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 265 TDDGGDVRFTCGTQELQDLVYKLKDLVRHCERTKCEF 375
TDD GD+RF ++ L L + + V H E C F
Sbjct: 453 TDDAGDLRFEQPSKLLLALAVMITEKVVHWEEA-CGF 488
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 154 HNIVKVLPNVIDVEWKLEVTSSPNASSE 237
+N VLP IDV+ + VT+S +A E
Sbjct: 57 YNYFSVLPMAIDVDVIVSVTTSDDAKVE 84
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +2
Query: 245 CILLH*RLMMEATLGSLVELKSCKIWCTN 331
C +H + ++E S ++C+IWC++
Sbjct: 10 CKAIHLKAIIEEPKLSCCHCETCRIWCSS 38
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 346 RHCERTKCEFS*EKVGVLILLC-ACAIVQLIFNKLFCKY 459
RHC C+ E+ V +LC C+ VQ +CKY
Sbjct: 163 RHCHNDACDHVLERPAVENMLCMICSKVQPAAQ--YCKY 199
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 24.6 bits (51), Expect = 9.0
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = -1
Query: 407 NNISTPTFSQENSHFVLSQCLTKSFNLYTRSCSS*VPQVNLTSPPSSVFNVTVYNTFSEL 228
N +ST + + V S LT+ +++C S + PP+S + + NT +
Sbjct: 212 NALSTASPIPVRTSSVSSTYLTQDREASSKNCLSKALAFSSIEPPASSASTSPRNTPTPS 271
Query: 227 ALGELVTSNFHS--TSITLGKT 168
G + +N S TS + GKT
Sbjct: 272 NNGTSINANVTSSLTSNSTGKT 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,331
Number of Sequences: 5004
Number of extensions: 39051
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -