Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335G07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49830-2|AAV58878.1|  324|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.      27   8.1  
Z83105-9|CAB05489.1|  199|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U49830-2|AAV58878.1|  324|Caenorhabditis elegans Hypothetical
           protein C33F10.4b protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +1

Query: 160 IVKVLPNVIDVEWKLEVTSSPNASSENVLYTVTLKTDDGGDVRFTCGTQELQDLVYKLKD 339
           + K + NV +V+    V   P+ SS+N+L   +   D       T GT+  + L +  + 
Sbjct: 222 VFKSILNVPNVQEDHIVMCIPSTSSDNILVKASCAKDGTSYHTLTIGTESSRSLTFLAEQ 281

Query: 340 LVRH--CERTKCEFS*EKVGVLIL 405
           L  H   E +K +    K G+LIL
Sbjct: 282 LRLHLIVEMSKLKSRPAK-GILIL 304


>Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 39  YTLKFQVQNEFCFITKSRISKLHSKHDFKTFKHLGDGFSQYCQSF 173
           + L+FQV  +FCF  K++IS L       TF+    G  ++   F
Sbjct: 36  FPLEFQVFTQFCF-EKTKISXLFLNGXKCTFRQFFTGIPRFLTLF 79


>Z83105-9|CAB05489.1|  199|Caenorhabditis elegans Hypothetical
           protein F14H3.9 protein.
          Length = 199

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -1

Query: 359 LSQCLTKSFNLYTRSCSS*VPQVNLTSPPSSVFNVT--VYNTFSELALGELVTSNFHSTS 186
           LS+  + +FN++   C S V Q N T+  +S+F +    Y        GE   +NF   S
Sbjct: 121 LSKLRSSNFNIFKYKCPSYVLQPNDTAFLTSMFTIEKWCYKWVMRKHCGESAVANFRKHS 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,239,517
Number of Sequences: 27780
Number of extensions: 219760
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)