Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335G06f
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190...    27   3.8  
04_04_1589 - 34636563-34636856,34636982-34637159,34637349-346374...    26   6.6  

>05_01_0251 +
           1901709-1901864,1901968-1901999,1902534-1902664,
           1902740-1902821,1902928-1903054,1903369-1903686,
           1903785-1903846,1903988-1904074,1904139-1904195,
           1906113-1906197,1906916-1907185,1908158-1908254,
           1908390-1908436,1908826-1908939,1909024-1909117,
           1909360-1909457,1910356-1910455,1911445-1911521,
           1911824-1913122
          Length = 1110

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 6   HTCLMFYNK-NILICVKFSFKISYCAIYYYY*VIKM 110
           H C ++Y   +I++C    F++S  A +Y+Y  +K+
Sbjct: 398 HLCSLYYLALSIILCFLILFRLSLYAGFYWYTKVKV 433


>04_04_1589 -
           34636563-34636856,34636982-34637159,34637349-34637461,
           34637713-34638316,34638401-34638581,34638674-34638816,
           34638972-34639141,34639221-34639307,34639414-34639639,
           34639825-34639964
          Length = 711

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 142 HKTIRCLEK*LLFVKRLS 195
           HK ++CL+K L F KR+S
Sbjct: 200 HKYLKCLDKVLRFAKRIS 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,050,963
Number of Sequences: 37544
Number of extensions: 87556
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)