Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335G05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   190   1e-49
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    26   3.9  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   5.2  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   6.8  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   9.0  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    25   9.0  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  190 bits (463), Expect = 1e-49
 Identities = 85/126 (67%), Positives = 110/126 (87%), Gaps = 1/126 (0%)
 Frame = +3

Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 302
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 303 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRK-XTGVT 479
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+R+   G  
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146

Query: 480 RSESHT 497
             + HT
Sbjct: 147 LGDPHT 152



 Score = 29.1 bits (62), Expect = 0.42
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 461 KXYWGNKIGKPHTVP 505
           + YWG  +G PHTVP
Sbjct: 140 RGYWGTALGDPHTVP 154


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 482 SCY-PSXFSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 315
           SCY P   S    R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 365 SCYMPESLS----RNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 126 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 248
           +D+ EW P++    LV   ++   E  +++    K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 232 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 342
           +SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +3

Query: 237 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG--HIGLGVKCSKEVA- 407
           E    F G  +  E + ++P       G  TRF   V   D NG   I  G+  + E A 
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAAC 437

Query: 408 TAIRGAIILAKLSVLPV 458
            ++ G   L   S+L +
Sbjct: 438 VSVHGGNRLGANSLLDI 454


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 413 GSGDFLAALHTQTNMTVVVANGNKCLETCA 324
           G+GD     H +T  T +V   +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,403
Number of Sequences: 5004
Number of extensions: 39668
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)