Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335G05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 181 4e-46
07_01_0756 + 5819367-5820038,5820847-5821005 176 1e-44
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 41 5e-04
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.3
11_01_0395 + 2999855-2999920,3000605-3002191 28 5.2
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 6.9
08_01_0312 + 2764744-2767390,2767632-2767990 27 6.9
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886... 27 9.1
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 181 bits (440), Expect = 4e-46
Identities = 82/114 (71%), Positives = 102/114 (89%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 302
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 303 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRK 464
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVR+
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRR 150
Score = 39.1 bits (87), Expect = 0.002
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 461 KXYWGNKIGKPHTVPC 508
+ YWGNKIG+PHTVPC
Sbjct: 150 RGYWGNKIGQPHTVPC 165
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 176 bits (428), Expect = 1e-44
Identities = 81/114 (71%), Positives = 101/114 (88%)
Frame = +3
Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 302
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 303 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRK 464
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVR+
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRR 153
Score = 40.7 bits (91), Expect = 7e-04
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 461 KXYWGNKIGKPHTVPC 508
+ YWGNKIGKPHTVPC
Sbjct: 153 RGYWGNKIGKPHTVPC 168
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +3
Query: 270 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 449
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 450 LPV 458
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3
Query: 342 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 437
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 404 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 288
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 210 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 329
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 126 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 260
+ KE +P G V G+ +++ + SLPIK++ + FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +1
Query: 322 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 447
+ HV LLPLAT T +A +PLP ALLSL S L
Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38
>04_03_0283 +
13887388-13887573,13887711-13887806,13888517-13888637,
13888734-13888840,13888949-13889166,13890219-13890396,
13890492-13890611,13891601-13891687,13892401-13892511,
13892618-13893439
Length = 681
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +3
Query: 372 IGLGVKCSKEVATAIRGAIILAKLSVLPVRKXTGVTRSESHTPSLAXHRQ 521
I + +KC E I+ ++ + + + + G+T + H PS H++
Sbjct: 452 IEVDIKCETEGEEGIQEGDVVTMYAWVSLHRRNGLTAALPHAPSFPFHKE 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,302,254
Number of Sequences: 37544
Number of extensions: 285547
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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