Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335G05f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   217   1e-56
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   217   1e-56
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   217   1e-56
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   217   1e-56
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   217   1e-56
AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA...    28   8.8  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  217 bits (529), Expect = 1e-56
 Identities = 105/114 (92%), Positives = 108/114 (94%)
 Frame = +3

Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 302
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 303 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRK 464
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVR+
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR 150



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 461 KXYWGNKIGKPHTVPC 508
           + YWGNKIGKPHTVPC
Sbjct: 150 RGYWGNKIGKPHTVPC 165


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  217 bits (529), Expect = 1e-56
 Identities = 105/114 (92%), Positives = 108/114 (94%)
 Frame = +3

Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 302
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 303 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRK 464
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVR+
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR 150



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 461 KXYWGNKIGKPHTVPC 508
           + YWGNKIGKPHTVPC
Sbjct: 150 RGYWGNKIGKPHTVPC 165


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  217 bits (529), Expect = 1e-56
 Identities = 105/114 (92%), Positives = 108/114 (94%)
 Frame = +3

Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 302
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 303 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRK 464
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVR+
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR 150



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 461 KXYWGNKIGKPHTVPC 508
           + YWGNKIGKPHTVPC
Sbjct: 150 RGYWGNKIGKPHTVPC 165


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  217 bits (529), Expect = 1e-56
 Identities = 105/114 (92%), Positives = 108/114 (94%)
 Frame = +3

Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 302
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 303 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRK 464
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVR+
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR 150



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 461 KXYWGNKIGKPHTVPC 508
           + YWGNKIGKPHTVPC
Sbjct: 150 RGYWGNKIGKPHTVPC 165


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  217 bits (529), Expect = 1e-56
 Identities = 105/114 (92%), Positives = 108/114 (94%)
 Frame = +3

Query: 123 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 302
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 303 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRK 464
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVR+
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRR 150



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 461 KXYWGNKIGKPHTVPC 508
           + YWGNKIGKPHTVPC
Sbjct: 150 RGYWGNKIGKPHTVPC 165


>AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA
           protein.
          Length = 1307

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 140 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQRI 235
           V SCH  RP  SRRK+R+    ++ F    R+
Sbjct: 816 VSSCH-CRPGYSRRKHREPCRRVISFHLGMRV 846


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,028,936
Number of Sequences: 53049
Number of extensions: 482570
Number of successful extensions: 2453
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1956
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)