Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335G05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   172   1e-43
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    30   0.87 
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    30   0.87 
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    28   3.5  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    28   3.5  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  172 bits (419), Expect = 1e-43
 Identities = 87/113 (76%), Positives = 96/113 (84%)
 Frame = +3

Query: 126 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 305
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID  L  +L DEVLKI PVQK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110

Query: 306 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRK 464
           QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVR+
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRR 163



 Score = 37.9 bits (84), Expect = 0.004
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +2

Query: 461 KXYWGNKIGKPHTVPC 508
           + YWGNKIG PHTVPC
Sbjct: 163 RGYWGNKIGLPHTVPC 178


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 331 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 155
           R R P  +   T    R+SS R   P   S +S  +  +       + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 154 VTGT 143
            + T
Sbjct: 582 QSNT 585


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 331 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 155
           R R P  +   T    R+SS R   P   S +S  +  +       + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 154 VTGT 143
            + T
Sbjct: 582 QSNT 585


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 281 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 424
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 281 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 424
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 347 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 261
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 347 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 261
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,149,047
Number of Sequences: 27780
Number of extensions: 237205
Number of successful extensions: 653
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)