Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335G04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0105 - 786623-787091,787229-787333,787476-787864                 33   0.14 
12_01_0105 - 823302-823770,823902-824006,824149-824540                 33   0.18 

>11_01_0105 - 786623-787091,787229-787333,787476-787864
          Length = 320

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +1

Query: 76  DKWHTLRFKCNHRIGLLIRASASSLTDQLRAMLM*QKHERATTRKCAYEL*RILTDFKKS 255
           D+WH     C+HR  L   A   SL  QLRA+++   H        A  L  IL   +K+
Sbjct: 13  DQWHPSSVCCDHRAALREIAKGQSLVTQLRAIVLPALHSDERCDLAAQMLEGILDCSRKA 72

Query: 256 LFAL 267
           +  L
Sbjct: 73  VSQL 76


>12_01_0105 - 823302-823770,823902-824006,824149-824540
          Length = 321

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +1

Query: 76  DKWHTLRFKCNHRIGLLIRASASSLTDQLRAMLM*QKHERATTRKCAYEL*RILTDFKKS 255
           D+WH     C+HR  L   A   SL  QLRA+++   H        A  L  IL   +K+
Sbjct: 13  DQWHPSSVCCDHRAALREIARGQSLVTQLRAIVLPALHSDERGDLAAQMLEGILDCSRKA 72

Query: 256 LFAL 267
           +  L
Sbjct: 73  ISEL 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,968,298
Number of Sequences: 37544
Number of extensions: 178970
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)