Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335G03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 225 4e-60
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 225 4e-60
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 28 0.97
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 1.3
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 3.9
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 3.9
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 25 5.2
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 5.2
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 6.8
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 25 9.0
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 225 bits (549), Expect = 4e-60
Identities = 100/144 (69%), Positives = 128/144 (88%)
Frame = +2
Query: 83 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 262
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 263 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 442
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL++++ +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 443 MARYLSGSVKEILGTAQSVGCTVE 514
+A+ LSG+VKEILGTA SVGCTV+
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVD 144
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 225 bits (549), Expect = 4e-60
Identities = 100/144 (69%), Positives = 128/144 (88%)
Frame = +2
Query: 83 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 262
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 263 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 442
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL++++ +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 443 MARYLSGSVKEILGTAQSVGCTVE 514
+A+ LSG+VKEILGTA SVGCTV+
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVD 144
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +2
Query: 251 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIM 430
K + Q ++ N + V ++ L LKE +D++K ++ S + A+
Sbjct: 23 KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82
Query: 431 RNRSMARYLSGSVKEI 478
RNR L +V I
Sbjct: 83 RNRKARENLKVNVSSI 98
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 486 VPRISFTEPERYRAIDLFLMIFAMP-TTSSREMLPL 382
V R+ ++PE DLFL I A+ TSS+ +LPL
Sbjct: 1475 VKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 385 RQHLP*RCSRHCEDHEKQINGPVPFWLSKRD 477
+ H+ +C HC H + PVP +K D
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPD 192
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 379 TQRQHLP*RCSRHCEDHEKQINGPVPFWLSKRD 477
T+ H P + HC H + + PVP +K D
Sbjct: 328 TKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 504 HPTDCAVPRISFTEPERYRAIDLFLMIFAMPTTSSREMLPLCLIF 370
+P + PR T +R + + + P TSSR LPL +++
Sbjct: 217 NPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 361 FTVTGRLLKGSDDKGCCR 308
F VTG +L S D GC R
Sbjct: 297 FNVTGTILSSSGDDGCVR 314
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 498 TDCAVPRISFTEPERYRAIDLFLMIFAMPTTSSREMLPLCLIFFCFLRSRG 346
T+ ++ E Y LFL+ F + TT +L L + FC + G
Sbjct: 2 TEMSIRLFLHLSKEFYDCCGLFLLTFFLLTTCQLRILSLSINAFCVFGASG 52
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 162 DDVAPTSPPTHRKFTILI 109
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 182 PLGLS--PKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAV 301
PLG+ PKK+ +++A+ G+K+T +VQ+ I V
Sbjct: 381 PLGVHMLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPV 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,847
Number of Sequences: 5004
Number of extensions: 45106
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -