Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335G03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical pr... 237 3e-63
Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical p... 49 2e-06
Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical pr... 28 3.5
AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine re... 28 3.5
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 28 4.7
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 28 4.7
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 28 4.7
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 28 4.7
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 28 4.7
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 28 4.7
AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin... 28 4.7
Z81571-5|CAB04615.1| 419|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical
protein JC8.3a protein.
Length = 165
Score = 237 bits (581), Expect = 3e-63
Identities = 107/144 (74%), Positives = 131/144 (90%)
Frame = +2
Query: 83 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 262
MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T
Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60
Query: 263 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 442
+LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ ++ IA+IMR RS
Sbjct: 61 KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120
Query: 443 MARYLSGSVKEILGTAQSVGCTVE 514
MA+ L G+VKEILGTAQSVGCT++
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTID 144
>Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical
protein JC8.3c protein.
Length = 50
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +2
Query: 428 MRNRSMARYLSGSVKEILGTAQSVGCTVE 514
MR RSMA+ L G+VKEILGTAQSVGCT++
Sbjct: 1 MRPRSMAKKLEGTVKEILGTAQSVGCTID 29
>Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical
protein C27H6.4b protein.
Length = 331
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 363 SRKISNTTATSPLKM*SALRRS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWRQA 521
SR +S TTA S L TD+ + A KR+ A +DVLWR A
Sbjct: 94 SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLA 146
>Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical
protein C27H6.4a protein.
Length = 272
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 363 SRKISNTTATSPLKM*SALRRS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWRQA 521
SR +S TTA S L TD+ + A KR+ A +DVLWR A
Sbjct: 35 SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLA 87
>AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine
receptor, class h protein37 protein.
Length = 345
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 504 HPTDCAVPRISFTEPERYRAIDL 436
HPT CAV F +P +Y IDL
Sbjct: 291 HPTACAVSLFLFYDPYQYYLIDL 313
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +2
Query: 203 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 373
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 374 IKHNGNISLEDVVGIAKIMRNRSM 445
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +2
Query: 203 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 373
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 374 IKHNGNISLEDVVGIAKIMRNRSM 445
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +2
Query: 203 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 373
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 374 IKHNGNISLEDVVGIAKIMRNRSM 445
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +2
Query: 203 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 373
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 374 IKHNGNISLEDVVGIAKIMRNRSM 445
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +2
Query: 203 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 373
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 374 IKHNGNISLEDVVGIAKIMRNRSM 445
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +2
Query: 203 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 373
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 374 IKHNGNISLEDVVGIAKIMRNRSM 445
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin
protein 73 protein.
Length = 577
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 256 DLETLPVTCGLGNVITHLFRRQTKRTDFR 170
D ++LP+ C LG V+ + ++ TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414
>Z81571-5|CAB04615.1| 419|Caenorhabditis elegans Hypothetical
protein M01G12.6 protein.
Length = 419
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 180 VLLVCLLKRWVMTL 221
+L++CLLKRW M L
Sbjct: 180 ILMICLLKRWKMNL 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,758,787
Number of Sequences: 27780
Number of extensions: 264671
Number of successful extensions: 699
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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