Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335F12f
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366...    27   4.3  
03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248     27   5.6  
09_04_0189 + 15438538-15438591,15438671-15438891,15438982-154392...    27   7.5  
05_05_0392 + 24629528-24630442                                         26   9.9  

>05_04_0274 -
           19636163-19636280,19636359-19636423,19636485-19636637,
           19636738-19637043,19637137-19637314,19637452-19637687,
           19637835-19638032,19638171-19638293,19638729-19639013,
           19639186-19639326,19639799-19640188,19640465-19640647,
           19640934-19641020
          Length = 820

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 56  TVPINKQTEFNIFLE 100
           TVP NK  EFNIFL+
Sbjct: 628 TVPSNKHAEFNIFLD 642


>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
          Length = 496

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 247 APXRXPARRGRXXAPRXRAAXTPQGTPRGGSTLNLHT 137
           AP + PA+R R        A   +G PRG +  + H+
Sbjct: 160 APPQEPAKRRRRNTAAAATARRGRGRPRGATASSAHS 196


>09_04_0189 +
           15438538-15438591,15438671-15438891,15438982-15439214,
           15439322-15439541,15440091-15440212,15441086-15441339,
           15441425-15441532,15441622-15441828,15441929-15442213,
           15442312-15442467
          Length = 619

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 76  LFVNRHCGLRAKLVVGDEL 20
           LFVN+H GLR ++V G+ L
Sbjct: 414 LFVNKHPGLRVRVVHGNTL 432


>05_05_0392 + 24629528-24630442
          Length = 304

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 261 RTSTDRMPRRSTTDTFKKLXESQRTPTTAXILGSRFSGPARGSP 392
           R   +R  RRS +   K+  + +RT  +A       SGP R  P
Sbjct: 181 REPGERPTRRSPSPATKRPPDQRRTAASAGAAAGAASGPQRKPP 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,713,798
Number of Sequences: 37544
Number of extensions: 127813
Number of successful extensions: 298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)