Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335F12f
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    32   0.18 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    32   0.18 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    32   0.18 
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   3.9  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    26   9.0  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +3

Query: 159 PPRGVPCGVXAARXRGAXXRPRRAGXRXGAXXGCRTSTDRMPRRSTTDTFKKLXESQRTP 338
           PPRG P G  +     +   PR  G R G   G R S++     S+    +     +  P
Sbjct: 359 PPRGGP-GKSSEESSESREGPR-GGPRGGPRGGPRKSSEE----SSESREEPRGPRRSPP 412

Query: 339 TTAXILGSRFSG-PARGSPPAGS 404
           T +   GS  +G P RGSPP GS
Sbjct: 413 TGSPPTGSPPTGRPPRGSPPTGS 435


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +3

Query: 159 PPRGVPCGVXAARXRGAXXRPRRAGXRXGAXXGCRTSTDRMPRRSTTDTFKKLXESQRTP 338
           PPRG P G  +     +   PR  G R G   G R S++     S+    +     +  P
Sbjct: 380 PPRGGP-GKSSEESSESREGPR-GGPRGGPRGGPRKSSEE----SSESREEPRGPRRSPP 433

Query: 339 TTAXILGSRFSG-PARGSPPAGS 404
           T +   GS  +G P RGSPP GS
Sbjct: 434 TGSPPTGSPPTGRPPRGSPPTGS 456


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +3

Query: 159 PPRGVPCGVXAARXRGAXXRPRRAGXRXGAXXGCRTSTDRMPRRSTTDTFKKLXESQRTP 338
           PPRG P G  +     +   PR  G R G   G R S++     S+    +     +  P
Sbjct: 365 PPRGGP-GKSSEESSESREGPR-GGPRGGPRGGPRKSSEE----SSESREEPRGPRRSPP 418

Query: 339 TTAXILGSRFSG-PARGSPPAGS 404
           T +   GS  +G P RGSPP GS
Sbjct: 419 TGSPPTGSPPTGRPPRGSPPTGS 441


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 264  TSTDRMPRRSTTDTFKKLXESQRTPTTAXILGSRFSGPARGSPPA 398
            T+TD   +RST+    +      TP    I    F  P+  SP A
Sbjct: 2460 TTTDTYSKRSTSTLVDRFGYETATPPAISIAAISFDQPSSSSPQA 2504


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 264  TSTDRMPRRSTTDTFKKLXESQRTPTTAXILGSRFSGPARGSPPA 398
            T+TD   +RST+    +      TP    I    F  P+  SP A
Sbjct: 2460 TTTDTYSKRSTSTLVDRFGYETATPPAISIAAISFDQPSSSSPQA 2504


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical
           protein ZK370.4b protein.
          Length = 1353

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 29  SYHELRS--QTTVPINKQTEFNIFLELIPEFNL 121
           S++ +R+  QT V I K+ +F+ FLE  PE  L
Sbjct: 540 SFYTIRAAVQTRVAIMKKKDFSAFLEAHPEIYL 572


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical
           protein ZK370.4a protein.
          Length = 1342

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 29  SYHELRS--QTTVPINKQTEFNIFLELIPEFNL 121
           S++ +R+  QT V I K+ +F+ FLE  PE  L
Sbjct: 529 SFYTIRAAVQTRVAIMKKKDFSAFLEAHPEIYL 561


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,063,519
Number of Sequences: 27780
Number of extensions: 105938
Number of successful extensions: 264
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)