Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335F10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 108 4e-25
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 29 0.32
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 3.0
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 3.9
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 26 3.9
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 5.2
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.2
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 25 6.8
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.0
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 25 9.0
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 108 bits (260), Expect = 4e-25
Identities = 47/115 (40%), Positives = 74/115 (64%)
Frame = +1
Query: 52 SRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNF 231
SR ++LAW+N +IE+ G A Q D ++ +P+K++ F+ N E++YI N+
Sbjct: 4 SRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNW 62
Query: 232 KILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFFDANYGGAAYDAVAQR 396
K+LQ F K G+DK+V ++L + + QDN EF+QW K+F+D Y G YDA+A+R
Sbjct: 63 KVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQYYPGGDYDALARR 117
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 29.5 bits (63), Expect = 0.32
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 175 PMKRIKFKTNLEHEYIQNFKILQAGFK 255
P KR+K KT L+HE+ + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/37 (24%), Positives = 25/37 (67%)
Frame = +3
Query: 36 YVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCRLLPV 146
Y++ ++ ++S+ + SP+ + E+++ ++R +LPV
Sbjct: 58 YLKNRVSRSWSSIDDAPSPLDIPEEQKALFRQNILPV 94
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 190 KFKTNLEHEYIQNFKILQAGFK 255
K TNLE+EY +KI+Q FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 192 FDSFHWYTAREQHVHELAIGGTCTQLF 112
FD WYT R + + L+I QLF
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAFQLF 135
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 170 VYQ*KESNLRQIWNMNIYRTLKYYKLVL 253
++Q S LR I N+N+Y+ + KL++
Sbjct: 654 IFQIHASQLRYIDNLNVYKNWAFRKLLI 681
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = -1
Query: 392 CATASYAAPP*LASKNFLNHCKNSKLSWKRPFTSLSMGTILSTPIFLKPACNIL---KFC 222
C+T + P + + L K WK + +ST + KP C++ +F
Sbjct: 228 CSTHTGTKKPYIFKETRLLGNNEHKSGWKEDGDRIIFEIPISTSLLSKPICDVSFDGQFS 287
Query: 221 IYSCSKFVLNLIL 183
+Y + +L I+
Sbjct: 288 LYIAHQLILETIV 300
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 399 FSLRHCVICRTSIVGVKEFLEPLQKLKIILETTL-HQFVNGYYLVHTH 259
FS + + C++ + G E L L I + HQF +GY+ +H H
Sbjct: 37 FSPKEEINCQSLLQG-PELKTALDNLNFIHKQKFEHQFRHGYWKLHPH 83
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 227 FCIYSCSKFVLNLILFIGTLP 165
F IYSC++ + N L + TLP
Sbjct: 171 FSIYSCAEKISNTSLLLCTLP 191
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -1
Query: 242 CNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQ*AAPVHNSSIFAKFDW 90
C IL + S F L+ LFI P N S+ AAPV ++FA F W
Sbjct: 289 CQILAGLQFVSSCFFLSS-LFIS--PSNKESLVILFAAPVFLITLFAMFLW 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,650
Number of Sequences: 5004
Number of extensions: 43465
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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