Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335F08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465...    28   4.0  

>01_06_0923 + 33044283-33044433,33044826-33045242,33046209-33046538,
            33046806-33046876,33047283-33047357,33047435-33047578,
            33047645-33047816,33047933-33048616,33048711-33048767,
            33048850-33048956,33049485-33049610,33050221-33050295,
            33050387-33050499,33050789-33050905,33051384-33051444,
            33051690-33051763,33052267-33052388,33052472-33052620,
            33053525-33053635,33053946-33054008,33054689-33054722,
            33055253-33055375,33055971-33056033,33056130-33056196,
            33056311-33056356,33056446-33056552,33056923-33056971,
            33057208-33057273,33057544-33057630
          Length = 1286

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 404  IPNSCYVGIFFFKGFYDLVIETFKSYLILIYIHIFMK 294
            I N+  VGIF+F GF    +E+  S +++  ++++ +
Sbjct: 1229 IGNNAIVGIFYFIGFGLFCLESLLSVVVIQQVYMYFR 1265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,224,469
Number of Sequences: 37544
Number of extensions: 193705
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)