Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335F06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF098986-2|AAC67423.1|  410|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical
           protein Y4C6B.5 protein.
          Length = 469

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 518 MISEAKALNIRIKLILTLYNSFINYMIFQ--ILDKE 417
           MI   + L + I L L +  S++NY +FQ  I +KE
Sbjct: 1   MIRYLRMLGMEIPLFLYMLGSYLNYPVFQNLIYEKE 36


>AF098986-2|AAC67423.1|  410|Caenorhabditis elegans Hypothetical
           protein C36C9.3 protein.
          Length = 410

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 232 LVDNANKDKRLQIKIYIQIQPNLFNVSTFSIENDIFMVISFSVSDF*ELLRYF 390
           ++D + ++K L  K +  I   L   ST SIE + F  +  S+SD+  LL  F
Sbjct: 202 IIDFSIEEKDLYTKCFTDITKML--KSTRSIEVEDFDALQVSISDYASLLEIF 252


>AF036703-3|AAB88556.2|  424|Caenorhabditis elegans Hypothetical
           protein T11F8.2 protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 333 IIFNRKSGYIEKIWLNLYIYFYL*SFVFVCIIY*MKNKYNYVDYLHFICLQFYE 172
           I  N + G++ K+WL  + YF      +   +     +    D L+ + L+FYE
Sbjct: 183 IYMNTEYGHVLKVWLAAFFYFPSLFLNYKTYLAASDGQIKLADKLNKLNLKFYE 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,916,754
Number of Sequences: 27780
Number of extensions: 193076
Number of successful extensions: 397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)