Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335F06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   7.7  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 345 DHKDIIFNRKSGYIEKIWLNLYIYFYL*SFVF 250
           +H   + N+ + +IE I LN Y +F   +F F
Sbjct: 211 NHDYNLENKLNYFIEDIGLNTYYFFLRQAFPF 242


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 345 DHKDIIFNRKSGYIEKIWLNLYIYFYL*SFVF 250
           +H   + N+   +IE I LN Y +F   +F F
Sbjct: 211 NHDYNLENKLIYFIEDIGLNTYYFFLRQAFPF 242


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 291 LNLYIYFYL*SFVFVCIIY*MKNKYNYVDYLHFI 190
           L LYI+F + +   + I+    + + YVD  H I
Sbjct: 481 LQLYIFFLVTTAGTIGILMDAPHIFEYVDQDHII 514


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 386 IFYELFRYYTFLCLKFE 436
           +FYE+FRY     ++++
Sbjct: 48  VFYEVFRYLELAMIRWK 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,239
Number of Sequences: 438
Number of extensions: 2691
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)