Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335F04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 28 0.73
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 28 0.73
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.0
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 26 3.0
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 3.9
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 25 5.2
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 5.2
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 25 6.8
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 25 9.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.0
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 25 9.0
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 28.3 bits (60), Expect = 0.73
Identities = 26/74 (35%), Positives = 38/74 (51%)
Frame = +3
Query: 165 STGAMLSAITSNELDTTDQNLNNS*TLASYLRKVWQ*TGRLETYFGQILRSSLLKLPI*T 344
S+GA SA T+N DTT+Q L A +LRK Q E + QI +S + L
Sbjct: 432 SSGASSSAATTNS-DTTEQILE-----APWLRKTEQIAVVHEEHPAQIKKSEIDILNNLI 485
Query: 345 QKLEKSCSRYRTFL 386
+K E ++Y+T +
Sbjct: 486 EKEEGELTKYQTLV 499
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 164 IYWGDVVSNNIKRAGYDGSEFEQFLNTGIISPEGLAIDWSA 286
+YWG+V S+ +A Y+ S+ + G++ + + W A
Sbjct: 266 VYWGEVSSSETTKAVYESSDL--VIGAGVLFNDYSTVGWRA 304
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1
Query: 50 FHHLSLKSYPAAEV 9
FHHL LKSYP A V
Sbjct: 216 FHHLLLKSYPNAYV 229
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 152 FSGKIYWGDVVSNNIKRAGYDGSEFEQFLNTGIISPEGLAIDWS-ARNIFWTD 307
F G+ Y + + R G+DGS + + + G L W+ A NI D
Sbjct: 424 FGGREYLKKTILTDFMRFGFDGSGADNWFDAGSCIDGRLTSAWNWANNIHTKD 476
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 396 PLGLEMFCTENKTFLTFVSKLATSIVSFLESVQNMFL 286
P L+ FC+E +T +SK +V++ S+ N+F+
Sbjct: 1311 PSLLDFFCSEFVPKITELSKEEDKLVAWATSIVNVFI 1347
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 257 PEGLAIDWSARNIFWTDS 310
PE + +DWS + I WT++
Sbjct: 125 PEAVDLDWSPQGIPWTET 142
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 120 EMPLLIGVANSLGEYLNGTR*IEVPSLVTK 31
++ LL+ +A E+ + IE+PSLVT+
Sbjct: 83 KIDLLLDIATETSEFKRENKAIELPSLVTQ 112
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 430 EDFPSLRMYGDAPRIRNVLYREQDFSNF 347
E FP L++ P +RN+ FSNF
Sbjct: 155 EFFPILKLCSQLPSLRNLTLDSNLFSNF 182
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +2
Query: 272 IDWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISN 388
+D SAR +LT+++A + + S+Q + N
Sbjct: 153 LDTSAREALVKQESELTVKIAQFTAAISNGIRSIQQLQN 191
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 321 LLKLPI*TQKLEKSCSRYRTFLIRGASP 404
LLKL + KL KS RT IR +SP
Sbjct: 4547 LLKLKLAWAKLVKSSDILRTTFIRSSSP 4574
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/32 (25%), Positives = 22/32 (68%)
Frame = -2
Query: 331 NFNSELLRICPKYVSSRPVYCQTFRRYDASVQ 236
++NS +L + P++ + ++C++ R+ + SV+
Sbjct: 373 HYNSMILFLWPRFQAVMDMHCESLRKTNLSVK 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,288
Number of Sequences: 5004
Number of extensions: 46010
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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