Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335F04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1190 + 24685623-24685807,24685914-24686049,24687637-24688158 30 1.3
01_01_0405 - 3057656-3058040,3058152-3058270,3058371-3058535 29 2.3
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116... 28 5.2
05_01_0319 + 2503963-2504176,2504316-2504376,2504691-2504769,250... 27 6.9
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148... 27 6.9
02_02_0146 - 7171656-7172044,7172383-7175008 27 6.9
01_05_0512 - 22852009-22852140,22852686-22852820,22853739-228537... 27 6.9
01_03_0124 + 12734846-12735356,12735449-12736041 27 6.9
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498... 24 7.3
08_02_0961 + 23061096-23061114,23061833-23061998,23062099-23063185 27 9.1
07_01_0533 + 3942813-3943164,3943244-3943458 27 9.1
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715... 27 9.1
03_04_0078 - 17093767-17093828,17094270-17094699,17095837-170959... 27 9.1
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928... 27 9.1
01_02_0027 - 10331614-10331737,10332435-10332526,10332977-103330... 27 9.1
>07_03_1190 + 24685623-24685807,24685914-24686049,24687637-24688158
Length = 280
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Frame = +2
Query: 167 YWGDVVSNNIKRAGY-----DGSEFEQFLNTGIISPEGLAIDWSARNIFWTDSKKLTIEV 331
Y V ++K GY G FL +P +DWS IFW+D + +
Sbjct: 33 YISQVSEISVKERGYFAIALSGGPLVSFLGKLCEAPYNKTLDWSKWYIFWSDERAVAKNH 92
Query: 332 ANLDTKVRK 358
A + ++ K
Sbjct: 93 AESNYRITK 101
>01_01_0405 - 3057656-3058040,3058152-3058270,3058371-3058535
Length = 222
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 239 NTGIISPEGLAIDWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNI 382
N ++ P GL+I WS FWT K L ++ DT + + S+QN+
Sbjct: 66 NCFMLFPRGLSITWSEDPRFWT-WKPLKEGSSDADTDTQIEVPSLQNV 112
>02_01_0168 +
1162447-1162866,1162940-1163317,1163606-1163829,
1163929-1163992,1164521-1164717,1164849-1165062
Length = 498
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 263 GLAIDWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGI 400
GL+ D N+F + KL + A +D ++ ++ F V++ + RG+
Sbjct: 284 GLSCDICVNNLFAVANTKLLKDYAQIDERLLQLAFIVKHWAKLRGV 329
>05_01_0319 +
2503963-2504176,2504316-2504376,2504691-2504769,
2504861-2504940,2505046-2505140,2505748-2505847,
2506647-2506716,2507657-2507758,2507972-2508053,
2508257-2508304,2508841-2509009,2509089-2509314,
2509961-2510131,2510200-2510438,2510600-2510684,
2510778-2510876,2510954-2511153,2511232-2511307,
2511463-2511675,2511763-2511815,2511999-2512151,
2512474-2512606
Length = 915
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 228 SNSDPSYPARLMLLLTTSPQ*IFPEKQSTLTETATWEMP 112
S++D SYPA+ L SPQ + + S L + W P
Sbjct: 475 SSNDQSYPAKKALNRQRSPQGLHKKVISFLLKPRNWRAP 513
>03_06_0449 -
34013973-34014056,34014595-34014630,34014729-34014816,
34015034-34015143,34015611-34015715,34015812-34015903,
34016145-34016232,34016407-34016526,34016603-34016721,
34017253-34018126
Length = 571
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +2
Query: 44 DGTSIYRVPFKYSPREFATPINSGISQVAVSVSVDCFSGKIYWGDVVSNNIKRAGYD 214
D S ++P K P E T IN+ + S S+ + G N IK AGY+
Sbjct: 291 DVCSPEKIPEKSPPEETETSINAKFRAIQPSSSIISYVEDNLLGRRRLNEIKNAGYN 347
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 375 CTENK-TFLTFVS-KLATSIVSFLESVQNMFLADQSIAKPSGDMMPVFRNCS 226
CT+ + T L+F S ++A I + + S++N+ D S +GD V NCS
Sbjct: 66 CTDGQVTSLSFQSFQIANPIPASICSLKNLKYLDLSYNNLTGDFPTVLYNCS 117
>01_05_0512 -
22852009-22852140,22852686-22852820,22853739-22853787,
22854043-22854128,22854211-22854291,22854394-22854496,
22854577-22854684,22854799-22854919,22855532-22855712
Length = 331
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 388 IRNVLYRE--QDFSNFCV*IGNFNSELLRICPKYVSSRPVYCQTFRRYDASVQEL 230
+RN LY+ +DF FC +G +E++ + + R T RY +EL
Sbjct: 181 MRNTLYKAYLEDFYKFCEKLGGATAEIMCDLLSFEADRRAVNITINRYPYGHEEL 235
>01_03_0124 + 12734846-12735356,12735449-12736041
Length = 367
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 98 TPINSGISQVAVSVSVDCFSGKIYWGDVVSNNIKRAGYDGSEFEQFLNTGIISP 259
T I+SG+ A D F G +GD+ S R +F F TG ++P
Sbjct: 89 TEISSGVGAFAPQTVTDSFVGMNLFGDLASGEFVR------QFTGFNATGFVAP 136
>07_01_0664 +
4979892-4979931,4980040-4980236,4982340-4982723,
4983499-4983549,4983659-4983741,4983818-4983917,
4984410-4984488,4984957-4985080,4985605-4985711,
4985810-4985938,4987004-4987089,4987200-4987367,
4987477-4987637,4987721-4987752,4987866-4988047,
4988386-4988465,4988885-4988950,4989060-4989349,
4990433-4990540,4991521-4991618,4991680-4991782,
4992269-4992345,4992449-4992520,4992579-4992670,
4992909-4992989,4993290-4993392,4994334-4994492,
4994696-4995085
Length = 1213
Score = 24.2 bits (50), Expect(2) = 7.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 348 KLEKSCSRYRTFLIRGASPYILKEGKSSGLTGIEAILRSSGRTWTARKDQS 500
KL+ + RTFLIR + K+G S+ T +++ G + + +K+ S
Sbjct: 634 KLKFLTYKLRTFLIRNGLSTLFKDGPSAYKTYYLRQMKNWGTSASKQKELS 684
Score = 21.4 bits (43), Expect(2) = 7.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 177 MLSAITSNELDTTDQNLNNS 236
M S+I S ++DT+ +N+N +
Sbjct: 594 MKSSIPSEDIDTSLKNINGA 613
>08_02_0961 + 23061096-23061114,23061833-23061998,23062099-23063185
Length = 423
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 212 DGSEFEQFLNTGIISPEGLAIDWSARNIFWTDSK 313
DGS+ L GI+ P L +D + ++ WT K
Sbjct: 60 DGSDQGHSLTVGIVQPRKLIVD-TGSDLIWTQCK 92
>07_01_0533 + 3942813-3943164,3943244-3943458
Length = 188
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 147 STLTETATWEMPLLIGVANSLGEYLNGTR*IEVPSLVTKKLP 22
S +T +L G A+SLG +N TR +E+P+ K P
Sbjct: 70 SVVTSKPACLCAVLGGGASSLGVTINNTRALELPAACNVKTP 111
>04_01_0556 -
7156851-7157096,7157288-7157530,7158112-7158153,
7158324-7158425,7159209-7159342,7161071-7161131,
7161192-7161284,7161557-7161639,7161984-7162239
Length = 419
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 135 P*ASIVSLEKSTGAMLSAITSNELDTTDQNLNNS*TLASYLRKV 266
P +S+VS E T A NE D D+N NN T YLR +
Sbjct: 40 PSSSLVSCEPVTTEAGRAGDENEADMDDENDNN--TYFEYLRHI 81
>03_04_0078 -
17093767-17093828,17094270-17094699,17095837-17095972,
17096081-17096265
Length = 270
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +2
Query: 167 YWGDVVSNNIKRAGY-----DGSEFEQFLNTGIISPEGLAIDWSARNIFWTDSK 313
Y V +IK GY G F+ +P +DWS IFW D +
Sbjct: 33 YISQVSEISIKERGYFAIALSGGPLISFMRKLCEAPYNKTLDWSKWYIFWADER 86
>03_02_0828 -
11592080-11592171,11592288-11592354,11592748-11592837,
11592914-11592967,11593109-11593169,11593252-11593319,
11593513-11593596,11594257-11594349,11594513-11594593,
11594665-11594793,11595193-11595273,11595401-11595484,
11596816-11596842,11597027-11597094,11597481-11597619
Length = 405
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 498 TDLSVPSMFAHSILGLLRFQSVQKIFPL*GCTAMPLG 388
+ L++ +F ILG++ QSV F L GC + LG
Sbjct: 34 SSLAILLLFLSEILGVITCQSVGICFILQGCFCVDLG 70
>01_02_0027 -
10331614-10331737,10332435-10332526,10332977-10333055,
10333110-10333408,10335310-10335588
Length = 290
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 331 NFNSELLRICPKYVSSRPVYCQTFRRYDASVQEL 230
+FN E R+CP+YV + F A ++E+
Sbjct: 186 SFNPEFERLCPRYVLPLAHHKPNFSEEGADIEEM 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,607,272
Number of Sequences: 37544
Number of extensions: 299871
Number of successful extensions: 755
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -