Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335F04f
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.    85   2e-18
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   2.0  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    25   2.0  

>AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.
          Length = 187

 Score = 84.6 bits (200), Expect = 2e-18
 Identities = 40/109 (36%), Positives = 67/109 (61%)
 Frame = +2

Query: 116 ISQVAVSVSVDCFSGKIYWGDVVSNNIKRAGYDGSEFEQFLNTGIISPEGLAIDWSARNI 295
           IS V V++ VD  +G+IYW D + + I R+  DG   +Q  +  + S +GL ID   R +
Sbjct: 76  ISNV-VTLDVDRRTGEIYWADTIEDVIMRSTPDGMRIKQIYSESMTSVDGLVIDSIGRKL 134

Query: 296 FWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDW 442
           +WTD+ +  +EV++L+  +R  L   +++  PRGIA+  + G +FW+DW
Sbjct: 135 YWTDAGRKVLEVSDLEEGIRSALV-WKDLEQPRGIALDYESGYLFWSDW 182


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 156  EKQSTLTETATW--EMPLLIGVANSLGEYLNGTR*IEVPSLV 37
            +   TL E  TW  EM + +G  N +GE   G R    PS +
Sbjct: 1278 DSDGTLLEIGTWSNEMAVGVGTDNDMGE--EGRRGASSPSFL 1317


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 518 HLGYRGGLIFPCRPCSPTRS*DCFDSSQSR 429
           H   RGG   PC PC   +  +  DS   R
Sbjct: 713 HNPARGGPFMPCVPCDCNKHAEICDSETGR 742


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,672
Number of Sequences: 2352
Number of extensions: 10523
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)