Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335F04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.7  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
 Frame = +2

Query: 167 YWGDVVSNNIKRAGYDGSEFEQFLNTGIISPEGL---AIDW------SARNIFWTDSKKL 319
           Y  +++ NNI  AG +  +  +   TG ISP  L    I W        RNIF  + + +
Sbjct: 49  YAKNILPNNISIAGQNTYKVAKGAFTGEISPAMLLDNGIPWVILGHSERRNIFGENDELI 108

Query: 320 TIEVAN 337
             +VA+
Sbjct: 109 AEKVAH 114


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 481  VHVRPLDLRIASIPVSPEDFPSLRM 407
            +++RPL +   + P+ P+D  SL +
Sbjct: 1048 LNLRPLSMEKGTRPMIPDDNTSLAL 1072


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,431
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)